Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yhjD and yhjE are separated by 410 nucleotides yhjE and yhjG are separated by 233 nucleotides
BNILDI_03365: yhjD - inner membrane protein YhjD, at 653,016 to 654,029
yhjD
BNILDI_03370: yhjE - Inner membrane metabolite transport protein YhjE, at 654,440 to 655,762
yhjE
BNILDI_03375: yhjG - AsmA family protein YhjG, at 655,996 to 658,056
yhjG
Position (kb) 654
655
656 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 653.560 kb on - strand, within yhjD at 653.593 kb on + strand, within yhjD at 653.594 kb on - strand, within yhjD at 653.657 kb on + strand, within yhjD at 653.825 kb on + strand, within yhjD at 653.844 kb on - strand, within yhjD at 653.859 kb on + strand, within yhjD at 653.860 kb on - strand, within yhjD at 653.860 kb on - strand, within yhjD at 653.988 kb on + strand at 653.990 kb on + strand at 653.991 kb on - strand at 654.028 kb on - strand at 654.033 kb on - strand at 654.130 kb on + strand at 654.141 kb on + strand at 654.181 kb on + strand at 654.405 kb on - strand at 654.405 kb on - strand at 654.410 kb on + strand at 654.499 kb on + strand at 654.502 kb on + strand at 654.554 kb on + strand at 654.561 kb on - strand at 654.923 kb on + strand, within yhjE at 655.019 kb on - strand, within yhjE at 655.046 kb on - strand, within yhjE at 655.079 kb on + strand, within yhjE at 655.079 kb on + strand, within yhjE at 655.080 kb on - strand, within yhjE at 655.191 kb on + strand, within yhjE at 655.220 kb on + strand, within yhjE at 655.222 kb on + strand, within yhjE at 655.222 kb on + strand, within yhjE at 655.233 kb on - strand, within yhjE at 655.247 kb on + strand, within yhjE at 655.248 kb on - strand, within yhjE at 655.252 kb on + strand, within yhjE at 655.262 kb on - strand, within yhjE at 655.262 kb on - strand, within yhjE at 655.333 kb on + strand, within yhjE at 655.598 kb on + strand, within yhjE at 655.599 kb on - strand, within yhjE at 655.606 kb on - strand, within yhjE at 655.637 kb on + strand at 655.637 kb on + strand at 655.637 kb on + strand at 655.638 kb on - strand at 655.638 kb on - strand at 655.640 kb on - strand at 655.640 kb on - strand at 655.661 kb on - strand at 655.671 kb on + strand at 655.686 kb on + strand at 655.686 kb on + strand at 655.688 kb on + strand at 655.688 kb on + strand at 655.689 kb on - strand at 655.760 kb on + strand at 655.761 kb on - strand at 655.761 kb on - strand at 655.761 kb on - strand at 655.761 kb on - strand at 655.765 kb on - strand at 655.836 kb on + strand at 655.836 kb on + strand at 655.836 kb on + strand at 655.836 kb on + strand at 655.941 kb on - strand at 656.180 kb on + strand at 656.180 kb on + strand at 656.180 kb on + strand at 656.218 kb on - strand, within yhjG at 656.233 kb on - strand, within yhjG at 656.405 kb on + strand, within yhjG at 656.406 kb on - strand, within yhjG at 656.497 kb on + strand, within yhjG at 656.531 kb on - strand, within yhjG at 656.531 kb on - strand, within yhjG at 656.622 kb on + strand, within yhjG at 656.623 kb on - strand, within yhjG at 656.742 kb on + strand, within yhjG at 656.742 kb on + strand, within yhjG at 656.742 kb on + strand, within yhjG at 656.742 kb on + strand, within yhjG at 656.742 kb on + strand, within yhjG at 656.743 kb on - strand, within yhjG at 656.743 kb on - strand, within yhjG at 656.748 kb on + strand, within yhjG at 656.748 kb on + strand, within yhjG
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 653,560 - yhjD BNILDI_03365 0.54 +0.1 653,593 + yhjD BNILDI_03365 0.57 +0.0 653,594 - yhjD BNILDI_03365 0.57 +0.4 653,657 + yhjD BNILDI_03365 0.63 -0.1 653,825 + yhjD BNILDI_03365 0.80 +0.6 653,844 - yhjD BNILDI_03365 0.82 -2.0 653,859 + yhjD BNILDI_03365 0.83 -0.1 653,860 - yhjD BNILDI_03365 0.83 +0.5 653,860 - yhjD BNILDI_03365 0.83 -0.2 653,988 + -0.5 653,990 + +1.8 653,991 - +1.3 654,028 - +0.1 654,033 - +0.5 654,130 + -2.9 654,141 + -0.6 654,181 + -0.1 654,405 - -0.3 654,405 - -0.7 654,410 + -0.7 654,499 + +0.5 654,502 + -0.5 654,554 + +0.0 654,561 - -0.5 654,923 + yhjE BNILDI_03370 0.37 -0.0 655,019 - yhjE BNILDI_03370 0.44 -1.1 655,046 - yhjE BNILDI_03370 0.46 -1.8 655,079 + yhjE BNILDI_03370 0.48 +0.3 655,079 + yhjE BNILDI_03370 0.48 +0.3 655,080 - yhjE BNILDI_03370 0.48 -3.1 655,191 + yhjE BNILDI_03370 0.57 +1.3 655,220 + yhjE BNILDI_03370 0.59 -1.2 655,222 + yhjE BNILDI_03370 0.59 +0.8 655,222 + yhjE BNILDI_03370 0.59 -0.4 655,233 - yhjE BNILDI_03370 0.60 -1.3 655,247 + yhjE BNILDI_03370 0.61 +0.1 655,248 - yhjE BNILDI_03370 0.61 -0.6 655,252 + yhjE BNILDI_03370 0.61 -3.2 655,262 - yhjE BNILDI_03370 0.62 +0.3 655,262 - yhjE BNILDI_03370 0.62 +0.1 655,333 + yhjE BNILDI_03370 0.67 +0.6 655,598 + yhjE BNILDI_03370 0.88 -0.2 655,599 - yhjE BNILDI_03370 0.88 +0.4 655,606 - yhjE BNILDI_03370 0.88 -0.4 655,637 + -0.1 655,637 + +0.6 655,637 + -0.0 655,638 - -0.4 655,638 - +0.9 655,640 - +0.7 655,640 - -0.0 655,661 - +1.4 655,671 + +0.8 655,686 + +0.7 655,686 + +0.5 655,688 + -0.3 655,688 + +0.2 655,689 - -0.7 655,760 + +0.4 655,761 - +0.0 655,761 - +0.0 655,761 - +0.7 655,761 - -0.2 655,765 - +0.7 655,836 + +0.6 655,836 + -1.2 655,836 + -2.3 655,836 + -0.1 655,941 - +0.4 656,180 + -0.6 656,180 + -0.5 656,180 + +0.8 656,218 - yhjG BNILDI_03375 0.11 -0.1 656,233 - yhjG BNILDI_03375 0.11 +0.5 656,405 + yhjG BNILDI_03375 0.20 +0.4 656,406 - yhjG BNILDI_03375 0.20 +0.3 656,497 + yhjG BNILDI_03375 0.24 -0.1 656,531 - yhjG BNILDI_03375 0.26 -0.6 656,531 - yhjG BNILDI_03375 0.26 -0.5 656,622 + yhjG BNILDI_03375 0.30 -0.8 656,623 - yhjG BNILDI_03375 0.30 -0.1 656,742 + yhjG BNILDI_03375 0.36 -0.2 656,742 + yhjG BNILDI_03375 0.36 +1.0 656,742 + yhjG BNILDI_03375 0.36 +1.3 656,742 + yhjG BNILDI_03375 0.36 -0.0 656,742 + yhjG BNILDI_03375 0.36 +1.0 656,743 - yhjG BNILDI_03375 0.36 +1.0 656,743 - yhjG BNILDI_03375 0.36 +0.7 656,748 + yhjG BNILDI_03375 0.36 -0.4 656,748 + yhjG BNILDI_03375 0.36 -0.1
Or see this region's nucleotide sequence