Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt prlC and rlmJ are separated by 202 nucleotides rlmJ and gorA are separated by 71 nucleotides
BNILDI_03210: prlC - oligopeptidase A, at 622,735 to 624,777
prlC
BNILDI_03215: rlmJ - 23S rRNA (adenine(2030)-N(6))-methyltransferase, at 624,980 to 625,822
rlmJ
BNILDI_03220: gorA - glutathione-disulfide reductase, at 625,894 to 627,246
gorA
Position (kb) 624
625
626 Strain fitness (log2 ratio) -2
-1
0
1
2 at 624.025 kb on - strand, within prlC at 624.071 kb on + strand, within prlC at 624.072 kb on - strand, within prlC at 624.104 kb on + strand, within prlC at 624.105 kb on - strand, within prlC at 624.457 kb on - strand, within prlC at 624.492 kb on - strand, within prlC at 624.492 kb on - strand, within prlC at 624.521 kb on + strand, within prlC at 624.582 kb on + strand at 624.582 kb on + strand at 624.582 kb on + strand at 624.583 kb on - strand at 624.583 kb on - strand at 624.583 kb on - strand at 624.638 kb on + strand at 624.638 kb on + strand at 624.639 kb on - strand at 624.827 kb on - strand at 624.830 kb on + strand at 624.830 kb on + strand at 624.831 kb on - strand at 624.851 kb on - strand at 624.851 kb on - strand at 624.879 kb on + strand at 624.911 kb on + strand at 624.911 kb on + strand at 624.912 kb on - strand at 624.944 kb on - strand at 625.036 kb on + strand at 625.037 kb on - strand at 625.078 kb on + strand, within rlmJ at 625.161 kb on - strand, within rlmJ at 625.299 kb on + strand, within rlmJ at 625.553 kb on + strand, within rlmJ at 625.801 kb on - strand at 625.843 kb on + strand at 625.844 kb on - strand at 625.844 kb on - strand at 625.847 kb on - strand at 625.858 kb on + strand at 625.858 kb on + strand at 625.906 kb on + strand at 625.912 kb on + strand at 625.912 kb on + strand at 625.912 kb on + strand at 625.913 kb on - strand at 625.913 kb on - strand at 625.966 kb on - strand at 626.085 kb on + strand, within gorA at 626.086 kb on - strand, within gorA at 626.089 kb on + strand, within gorA at 626.090 kb on - strand, within gorA at 626.125 kb on - strand, within gorA at 626.181 kb on + strand, within gorA at 626.181 kb on + strand, within gorA at 626.188 kb on + strand, within gorA at 626.212 kb on - strand, within gorA at 626.222 kb on + strand, within gorA at 626.222 kb on + strand, within gorA at 626.351 kb on - strand, within gorA at 626.487 kb on + strand, within gorA at 626.785 kb on - strand, within gorA at 626.789 kb on - strand, within gorA
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 624,025 - prlC BNILDI_03210 0.63 -0.5 624,071 + prlC BNILDI_03210 0.65 -0.1 624,072 - prlC BNILDI_03210 0.65 -0.4 624,104 + prlC BNILDI_03210 0.67 -0.7 624,105 - prlC BNILDI_03210 0.67 -0.1 624,457 - prlC BNILDI_03210 0.84 -0.8 624,492 - prlC BNILDI_03210 0.86 +0.9 624,492 - prlC BNILDI_03210 0.86 -2.6 624,521 + prlC BNILDI_03210 0.87 +0.3 624,582 + -0.2 624,582 + -0.6 624,582 + -0.7 624,583 - -0.3 624,583 - -0.2 624,583 - +0.6 624,638 + -0.3 624,638 + -0.1 624,639 - +0.3 624,827 - +0.3 624,830 + +0.1 624,830 + +0.5 624,831 - -0.2 624,851 - +0.0 624,851 - +0.0 624,879 + +0.4 624,911 + +0.1 624,911 + -1.0 624,912 - -2.4 624,944 - +1.2 625,036 + -0.0 625,037 - +1.0 625,078 + rlmJ BNILDI_03215 0.12 -0.6 625,161 - rlmJ BNILDI_03215 0.21 +0.3 625,299 + rlmJ BNILDI_03215 0.38 -0.2 625,553 + rlmJ BNILDI_03215 0.68 -0.6 625,801 - +0.4 625,843 + -0.1 625,844 - -0.5 625,844 - +0.4 625,847 - -0.8 625,858 + +0.3 625,858 + +0.1 625,906 + +0.2 625,912 + -0.1 625,912 + +0.7 625,912 + -0.9 625,913 - -0.1 625,913 - -0.4 625,966 - +1.5 626,085 + gorA BNILDI_03220 0.14 +0.0 626,086 - gorA BNILDI_03220 0.14 +0.2 626,089 + gorA BNILDI_03220 0.14 +2.2 626,090 - gorA BNILDI_03220 0.14 +1.5 626,125 - gorA BNILDI_03220 0.17 -0.5 626,181 + gorA BNILDI_03220 0.21 -0.4 626,181 + gorA BNILDI_03220 0.21 -1.3 626,188 + gorA BNILDI_03220 0.22 +1.0 626,212 - gorA BNILDI_03220 0.24 +0.2 626,222 + gorA BNILDI_03220 0.24 +0.9 626,222 + gorA BNILDI_03220 0.24 +0.1 626,351 - gorA BNILDI_03220 0.34 -0.1 626,487 + gorA BNILDI_03220 0.44 +0.1 626,785 - gorA BNILDI_03220 0.66 +0.5 626,789 - gorA BNILDI_03220 0.66 +0.4
Or see this region's nucleotide sequence