Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt feoB and feoC overlap by 1 nucleotides feoC and rpnA are separated by 202 nucleotides rpnA and bioH are separated by 28 nucleotides bioH and gntX are separated by 37 nucleotides
BNILDI_02715: feoB - Fe(2+) transporter permease subunit FeoB, at 517,197 to 519,518
feoB
BNILDI_02720: feoC - [Fe-S]-dependent transcriptional repressor FeoC, at 519,518 to 519,754
feoC
BNILDI_02725: rpnA - recombination-promoting nuclease RpnA, at 519,957 to 520,835
rpnA
BNILDI_02730: bioH - pimeloyl-ACP methyl ester esterase BioH, at 520,864 to 521,634
bioH
BNILDI_02735: gntX - DNA utilization protein GntX, at 521,672 to 522,355
gntX
Position (kb) 519
520
521 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 518.984 kb on + strand, within feoB at 519.017 kb on + strand, within feoB at 519.189 kb on + strand, within feoB at 519.190 kb on - strand, within feoB at 519.195 kb on + strand, within feoB at 519.216 kb on + strand, within feoB at 519.216 kb on + strand, within feoB at 519.216 kb on + strand, within feoB at 519.217 kb on - strand, within feoB at 519.217 kb on - strand, within feoB at 519.220 kb on + strand, within feoB at 519.220 kb on + strand, within feoB at 519.220 kb on + strand, within feoB at 519.221 kb on - strand, within feoB at 519.221 kb on - strand, within feoB at 519.221 kb on - strand, within feoB at 519.221 kb on - strand, within feoB at 519.221 kb on - strand, within feoB at 519.221 kb on - strand, within feoB at 519.227 kb on + strand, within feoB at 519.227 kb on + strand, within feoB at 519.228 kb on - strand, within feoB at 519.228 kb on - strand, within feoB at 519.228 kb on - strand, within feoB at 519.228 kb on - strand, within feoB at 519.345 kb on + strand at 519.363 kb on + strand at 519.363 kb on + strand at 519.530 kb on - strand at 519.700 kb on + strand, within feoC at 519.701 kb on - strand, within feoC at 519.788 kb on - strand at 519.855 kb on - strand at 519.897 kb on + strand at 519.897 kb on + strand at 519.897 kb on + strand at 519.898 kb on - strand at 520.009 kb on + strand at 520.137 kb on + strand, within rpnA at 520.137 kb on + strand, within rpnA at 520.138 kb on - strand, within rpnA at 520.182 kb on + strand, within rpnA at 520.182 kb on + strand, within rpnA at 520.182 kb on + strand, within rpnA at 520.182 kb on + strand, within rpnA at 520.183 kb on - strand, within rpnA at 520.188 kb on + strand, within rpnA at 520.188 kb on + strand, within rpnA at 520.188 kb on + strand, within rpnA at 520.188 kb on + strand, within rpnA at 520.188 kb on + strand, within rpnA at 520.188 kb on + strand, within rpnA at 520.189 kb on - strand, within rpnA at 520.189 kb on - strand, within rpnA at 520.189 kb on - strand, within rpnA at 520.189 kb on - strand, within rpnA at 520.189 kb on - strand, within rpnA at 520.189 kb on - strand, within rpnA at 520.189 kb on - strand, within rpnA at 520.189 kb on - strand, within rpnA at 520.312 kb on + strand, within rpnA at 520.312 kb on + strand, within rpnA at 520.312 kb on + strand, within rpnA at 520.312 kb on + strand, within rpnA at 520.323 kb on + strand, within rpnA at 520.404 kb on + strand, within rpnA at 520.405 kb on - strand, within rpnA at 520.472 kb on + strand, within rpnA at 520.502 kb on + strand, within rpnA at 520.503 kb on - strand, within rpnA at 520.532 kb on - strand, within rpnA at 520.550 kb on - strand, within rpnA at 520.553 kb on - strand, within rpnA at 520.600 kb on - strand, within rpnA at 520.625 kb on - strand, within rpnA at 520.739 kb on + strand, within rpnA at 520.739 kb on + strand, within rpnA at 520.739 kb on + strand, within rpnA at 520.739 kb on + strand, within rpnA at 520.739 kb on + strand, within rpnA at 520.740 kb on - strand, within rpnA at 520.751 kb on - strand at 520.776 kb on - strand at 520.833 kb on + strand at 520.865 kb on + strand at 520.950 kb on + strand, within bioH at 520.950 kb on + strand, within bioH at 520.951 kb on - strand, within bioH at 520.951 kb on - strand, within bioH at 520.951 kb on - strand, within bioH at 520.951 kb on - strand, within bioH at 520.952 kb on + strand, within bioH at 520.953 kb on - strand, within bioH at 520.953 kb on - strand, within bioH at 520.953 kb on - strand, within bioH at 521.027 kb on + strand, within bioH at 521.027 kb on + strand, within bioH at 521.027 kb on + strand, within bioH at 521.027 kb on + strand, within bioH at 521.028 kb on - strand, within bioH at 521.028 kb on - strand, within bioH at 521.028 kb on - strand, within bioH at 521.106 kb on + strand, within bioH at 521.197 kb on + strand, within bioH at 521.302 kb on - strand, within bioH at 521.514 kb on + strand, within bioH at 521.515 kb on - strand, within bioH at 521.515 kb on - strand, within bioH at 521.527 kb on - strand, within bioH at 521.527 kb on - strand, within bioH at 521.628 kb on + strand at 521.628 kb on + strand at 521.657 kb on + strand at 521.671 kb on + strand at 521.671 kb on + strand at 521.671 kb on + strand at 521.671 kb on + strand at 521.671 kb on + strand at 521.671 kb on + strand at 521.671 kb on + strand at 521.671 kb on + strand at 521.672 kb on - strand at 521.672 kb on - strand at 521.672 kb on - strand at 521.672 kb on - strand at 521.676 kb on + strand at 521.677 kb on - strand at 521.683 kb on - strand at 521.691 kb on + strand at 521.692 kb on - strand at 521.770 kb on + strand, within gntX at 521.771 kb on - strand, within gntX at 521.778 kb on + strand, within gntX
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 518,984 + feoB BNILDI_02715 0.77 -0.6 519,017 + feoB BNILDI_02715 0.78 -0.0 519,189 + feoB BNILDI_02715 0.86 +0.8 519,190 - feoB BNILDI_02715 0.86 -0.3 519,195 + feoB BNILDI_02715 0.86 +1.3 519,216 + feoB BNILDI_02715 0.87 +0.0 519,216 + feoB BNILDI_02715 0.87 -1.1 519,216 + feoB BNILDI_02715 0.87 -2.5 519,217 - feoB BNILDI_02715 0.87 +0.4 519,217 - feoB BNILDI_02715 0.87 +1.8 519,220 + feoB BNILDI_02715 0.87 +0.3 519,220 + feoB BNILDI_02715 0.87 -1.6 519,220 + feoB BNILDI_02715 0.87 -0.9 519,221 - feoB BNILDI_02715 0.87 +0.7 519,221 - feoB BNILDI_02715 0.87 +0.0 519,221 - feoB BNILDI_02715 0.87 -0.3 519,221 - feoB BNILDI_02715 0.87 +0.2 519,221 - feoB BNILDI_02715 0.87 +1.0 519,221 - feoB BNILDI_02715 0.87 +0.4 519,227 + feoB BNILDI_02715 0.87 +0.4 519,227 + feoB BNILDI_02715 0.87 +0.5 519,228 - feoB BNILDI_02715 0.87 -0.3 519,228 - feoB BNILDI_02715 0.87 -0.5 519,228 - feoB BNILDI_02715 0.87 -1.0 519,228 - feoB BNILDI_02715 0.87 +0.4 519,345 + -1.1 519,363 + +0.3 519,363 + +0.4 519,530 - +0.7 519,700 + feoC BNILDI_02720 0.77 +0.1 519,701 - feoC BNILDI_02720 0.77 +1.4 519,788 - -0.3 519,855 - +1.1 519,897 + -0.0 519,897 + -0.2 519,897 + -0.2 519,898 - +0.7 520,009 + -2.6 520,137 + rpnA BNILDI_02725 0.20 +0.4 520,137 + rpnA BNILDI_02725 0.20 +0.1 520,138 - rpnA BNILDI_02725 0.21 +0.6 520,182 + rpnA BNILDI_02725 0.26 -1.6 520,182 + rpnA BNILDI_02725 0.26 -0.3 520,182 + rpnA BNILDI_02725 0.26 +0.8 520,182 + rpnA BNILDI_02725 0.26 -0.1 520,183 - rpnA BNILDI_02725 0.26 -0.4 520,188 + rpnA BNILDI_02725 0.26 -0.1 520,188 + rpnA BNILDI_02725 0.26 -0.4 520,188 + rpnA BNILDI_02725 0.26 +0.0 520,188 + rpnA BNILDI_02725 0.26 -0.1 520,188 + rpnA BNILDI_02725 0.26 +0.1 520,188 + rpnA BNILDI_02725 0.26 +0.1 520,189 - rpnA BNILDI_02725 0.26 +0.2 520,189 - rpnA BNILDI_02725 0.26 +0.3 520,189 - rpnA BNILDI_02725 0.26 +1.0 520,189 - rpnA BNILDI_02725 0.26 +0.4 520,189 - rpnA BNILDI_02725 0.26 +1.2 520,189 - rpnA BNILDI_02725 0.26 -0.5 520,189 - rpnA BNILDI_02725 0.26 -0.7 520,189 - rpnA BNILDI_02725 0.26 -0.6 520,312 + rpnA BNILDI_02725 0.40 +0.8 520,312 + rpnA BNILDI_02725 0.40 -1.0 520,312 + rpnA BNILDI_02725 0.40 -0.0 520,312 + rpnA BNILDI_02725 0.40 +0.1 520,323 + rpnA BNILDI_02725 0.42 -0.3 520,404 + rpnA BNILDI_02725 0.51 -0.1 520,405 - rpnA BNILDI_02725 0.51 -0.4 520,472 + rpnA BNILDI_02725 0.59 +0.9 520,502 + rpnA BNILDI_02725 0.62 -0.6 520,503 - rpnA BNILDI_02725 0.62 -0.0 520,532 - rpnA BNILDI_02725 0.65 -0.3 520,550 - rpnA BNILDI_02725 0.67 -0.1 520,553 - rpnA BNILDI_02725 0.68 -2.3 520,600 - rpnA BNILDI_02725 0.73 -0.1 520,625 - rpnA BNILDI_02725 0.76 -0.8 520,739 + rpnA BNILDI_02725 0.89 -0.3 520,739 + rpnA BNILDI_02725 0.89 +0.3 520,739 + rpnA BNILDI_02725 0.89 +0.1 520,739 + rpnA BNILDI_02725 0.89 -1.1 520,739 + rpnA BNILDI_02725 0.89 +0.2 520,740 - rpnA BNILDI_02725 0.89 -0.1 520,751 - +0.6 520,776 - -0.4 520,833 + -0.5 520,865 + +0.6 520,950 + bioH BNILDI_02730 0.11 -0.1 520,950 + bioH BNILDI_02730 0.11 -1.5 520,951 - bioH BNILDI_02730 0.11 +0.7 520,951 - bioH BNILDI_02730 0.11 -1.2 520,951 - bioH BNILDI_02730 0.11 -0.6 520,951 - bioH BNILDI_02730 0.11 -0.7 520,952 + bioH BNILDI_02730 0.11 +0.0 520,953 - bioH BNILDI_02730 0.12 +0.1 520,953 - bioH BNILDI_02730 0.12 -0.2 520,953 - bioH BNILDI_02730 0.12 +0.4 521,027 + bioH BNILDI_02730 0.21 -0.4 521,027 + bioH BNILDI_02730 0.21 -2.2 521,027 + bioH BNILDI_02730 0.21 +0.6 521,027 + bioH BNILDI_02730 0.21 +0.0 521,028 - bioH BNILDI_02730 0.21 +0.4 521,028 - bioH BNILDI_02730 0.21 -0.9 521,028 - bioH BNILDI_02730 0.21 -0.1 521,106 + bioH BNILDI_02730 0.31 +0.8 521,197 + bioH BNILDI_02730 0.43 +0.6 521,302 - bioH BNILDI_02730 0.57 +0.5 521,514 + bioH BNILDI_02730 0.84 +0.7 521,515 - bioH BNILDI_02730 0.84 +0.4 521,515 - bioH BNILDI_02730 0.84 -1.1 521,527 - bioH BNILDI_02730 0.86 +0.0 521,527 - bioH BNILDI_02730 0.86 +0.1 521,628 + -0.5 521,628 + +1.2 521,657 + -0.9 521,671 + -3.4 521,671 + -0.2 521,671 + +0.4 521,671 + +0.0 521,671 + -0.1 521,671 + -0.5 521,671 + +0.2 521,671 + +1.1 521,672 - +0.2 521,672 - +0.0 521,672 - +0.1 521,672 - -0.4 521,676 + +0.9 521,677 - -1.2 521,683 - +0.3 521,691 + +0.4 521,692 - -0.4 521,770 + gntX BNILDI_02735 0.14 -0.2 521,771 - gntX BNILDI_02735 0.14 -0.4 521,778 + gntX BNILDI_02735 0.15 -0.5
Or see this region's nucleotide sequence