Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yhfS and yhfT are separated by 11 nucleotides yhfT and BNILDI_02560 are separated by 11 nucleotides BNILDI_02560 and php are separated by 10 nucleotides
BNILDI_02550: yhfS - Uncharacterized protein YhfS, at 481,694 to 482,779
yhfS
BNILDI_02555: yhfT - Uncharacterized protein YhfT, at 482,791 to 484,095
yhfT
BNILDI_02560: BNILDI_02560 - DUF2620 domain-containing protein, at 484,107 to 484,460
_02560
BNILDI_02565: php - phosphotriesterase-related protein, at 484,471 to 485,349
php
Position (kb) 482
483
484
485 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 481.957 kb on + strand, within yhfS at 481.957 kb on + strand, within yhfS at 482.075 kb on + strand, within yhfS at 482.075 kb on + strand, within yhfS at 482.118 kb on + strand, within yhfS at 482.119 kb on - strand, within yhfS at 482.135 kb on - strand, within yhfS at 482.190 kb on - strand, within yhfS at 482.262 kb on + strand, within yhfS at 482.262 kb on + strand, within yhfS at 482.263 kb on - strand, within yhfS at 482.328 kb on + strand, within yhfS at 482.353 kb on + strand, within yhfS at 482.434 kb on + strand, within yhfS at 482.458 kb on + strand, within yhfS at 482.462 kb on - strand, within yhfS at 482.660 kb on + strand, within yhfS at 482.660 kb on + strand, within yhfS at 482.660 kb on + strand, within yhfS at 482.661 kb on - strand, within yhfS at 482.779 kb on + strand at 482.913 kb on - strand at 482.941 kb on - strand, within yhfT at 482.955 kb on + strand, within yhfT at 482.955 kb on + strand, within yhfT at 482.956 kb on - strand, within yhfT at 483.004 kb on - strand, within yhfT at 483.037 kb on - strand, within yhfT at 483.102 kb on + strand, within yhfT at 483.115 kb on + strand, within yhfT at 483.115 kb on + strand, within yhfT at 483.115 kb on + strand, within yhfT at 483.115 kb on + strand, within yhfT at 483.116 kb on - strand, within yhfT at 483.150 kb on - strand, within yhfT at 483.247 kb on - strand, within yhfT at 483.559 kb on - strand, within yhfT at 483.698 kb on - strand, within yhfT at 483.715 kb on + strand, within yhfT at 483.715 kb on + strand, within yhfT at 483.716 kb on - strand, within yhfT at 483.716 kb on - strand, within yhfT at 483.718 kb on + strand, within yhfT at 483.718 kb on + strand, within yhfT at 483.718 kb on + strand, within yhfT at 483.718 kb on + strand, within yhfT at 483.719 kb on - strand, within yhfT at 483.719 kb on - strand, within yhfT at 483.719 kb on - strand, within yhfT at 483.719 kb on - strand, within yhfT at 483.769 kb on - strand, within yhfT at 483.967 kb on - strand at 483.967 kb on - strand at 483.968 kb on + strand at 483.968 kb on + strand at 484.083 kb on + strand at 484.220 kb on + strand, within BNILDI_02560 at 484.220 kb on + strand, within BNILDI_02560 at 484.254 kb on - strand, within BNILDI_02560 at 484.255 kb on + strand, within BNILDI_02560 at 484.301 kb on + strand, within BNILDI_02560 at 484.304 kb on + strand, within BNILDI_02560 at 484.304 kb on + strand, within BNILDI_02560 at 484.305 kb on - strand, within BNILDI_02560 at 484.305 kb on - strand, within BNILDI_02560 at 484.318 kb on + strand, within BNILDI_02560 at 484.321 kb on + strand, within BNILDI_02560 at 484.322 kb on - strand, within BNILDI_02560 at 484.434 kb on + strand at 484.434 kb on + strand at 484.572 kb on - strand, within php at 484.703 kb on + strand, within php at 484.876 kb on - strand, within php
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 481,957 + yhfS BNILDI_02550 0.24 +0.7 481,957 + yhfS BNILDI_02550 0.24 -1.1 482,075 + yhfS BNILDI_02550 0.35 -0.4 482,075 + yhfS BNILDI_02550 0.35 +0.2 482,118 + yhfS BNILDI_02550 0.39 +1.2 482,119 - yhfS BNILDI_02550 0.39 +0.1 482,135 - yhfS BNILDI_02550 0.41 -2.2 482,190 - yhfS BNILDI_02550 0.46 -0.1 482,262 + yhfS BNILDI_02550 0.52 +0.1 482,262 + yhfS BNILDI_02550 0.52 -0.0 482,263 - yhfS BNILDI_02550 0.52 +0.5 482,328 + yhfS BNILDI_02550 0.58 +0.2 482,353 + yhfS BNILDI_02550 0.61 +0.0 482,434 + yhfS BNILDI_02550 0.68 -1.0 482,458 + yhfS BNILDI_02550 0.70 -2.9 482,462 - yhfS BNILDI_02550 0.71 +0.1 482,660 + yhfS BNILDI_02550 0.89 +2.6 482,660 + yhfS BNILDI_02550 0.89 -0.3 482,660 + yhfS BNILDI_02550 0.89 +0.7 482,661 - yhfS BNILDI_02550 0.89 -2.0 482,779 + -0.0 482,913 - +0.5 482,941 - yhfT BNILDI_02555 0.11 -1.2 482,955 + yhfT BNILDI_02555 0.13 -0.1 482,955 + yhfT BNILDI_02555 0.13 +0.1 482,956 - yhfT BNILDI_02555 0.13 +0.5 483,004 - yhfT BNILDI_02555 0.16 -0.4 483,037 - yhfT BNILDI_02555 0.19 +0.6 483,102 + yhfT BNILDI_02555 0.24 +0.1 483,115 + yhfT BNILDI_02555 0.25 -0.7 483,115 + yhfT BNILDI_02555 0.25 -0.1 483,115 + yhfT BNILDI_02555 0.25 +0.0 483,115 + yhfT BNILDI_02555 0.25 -0.8 483,116 - yhfT BNILDI_02555 0.25 -1.0 483,150 - yhfT BNILDI_02555 0.28 -2.2 483,247 - yhfT BNILDI_02555 0.35 +0.1 483,559 - yhfT BNILDI_02555 0.59 +0.1 483,698 - yhfT BNILDI_02555 0.70 -0.7 483,715 + yhfT BNILDI_02555 0.71 +1.3 483,715 + yhfT BNILDI_02555 0.71 -0.4 483,716 - yhfT BNILDI_02555 0.71 +0.3 483,716 - yhfT BNILDI_02555 0.71 +0.3 483,718 + yhfT BNILDI_02555 0.71 +0.3 483,718 + yhfT BNILDI_02555 0.71 -0.5 483,718 + yhfT BNILDI_02555 0.71 +0.2 483,718 + yhfT BNILDI_02555 0.71 +0.2 483,719 - yhfT BNILDI_02555 0.71 -0.8 483,719 - yhfT BNILDI_02555 0.71 +0.4 483,719 - yhfT BNILDI_02555 0.71 +1.0 483,719 - yhfT BNILDI_02555 0.71 +0.2 483,769 - yhfT BNILDI_02555 0.75 +0.1 483,967 - +0.0 483,967 - +0.6 483,968 + +0.3 483,968 + -0.6 484,083 + -1.5 484,220 + BNILDI_02560 0.32 -0.3 484,220 + BNILDI_02560 0.32 -0.4 484,254 - BNILDI_02560 0.42 +0.0 484,255 + BNILDI_02560 0.42 -0.2 484,301 + BNILDI_02560 0.55 +0.1 484,304 + BNILDI_02560 0.56 -0.4 484,304 + BNILDI_02560 0.56 -0.4 484,305 - BNILDI_02560 0.56 -1.7 484,305 - BNILDI_02560 0.56 -0.1 484,318 + BNILDI_02560 0.60 +0.1 484,321 + BNILDI_02560 0.60 +0.1 484,322 - BNILDI_02560 0.61 +0.4 484,434 + +0.3 484,434 + -1.8 484,572 - php BNILDI_02565 0.11 +0.4 484,703 + php BNILDI_02565 0.26 -1.8 484,876 - php BNILDI_02565 0.46 +0.2
Or see this region's nucleotide sequence