Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pnp and rpsO are separated by 246 nucleotides rpsO and truB are separated by 148 nucleotides truB and rbfA overlap by 1 nucleotides rbfA and infB are separated by 163 nucleotides
BNILDI_01595: pnp - polyribonucleotide nucleotidyltransferase, at 313,554 to 315,689
pnp
BNILDI_01605: rpsO - 30S ribosomal protein S15, at 315,936 to 316,205
rpsO
BNILDI_01610: truB - tRNA pseudouridine(55) synthase TruB, at 316,354 to 317,298
truB
BNILDI_01615: rbfA - 30S ribosome-binding factor RbfA, at 317,298 to 317,699
rbfA
BNILDI_01625: infB - Translation initiation factor IF-2, at 317,863 to 320,535
infB
Position (kb) 316
317
318 Strain fitness (log2 ratio) -1
0
1 at 315.590 kb on + strand at 315.596 kb on + strand at 315.693 kb on - strand at 315.693 kb on - strand at 315.768 kb on + strand at 315.791 kb on + strand at 315.792 kb on - strand at 315.792 kb on - strand at 315.792 kb on - strand at 315.848 kb on - strand at 315.856 kb on + strand at 315.857 kb on - strand at 315.857 kb on - strand at 316.485 kb on + strand, within truB at 316.485 kb on + strand, within truB at 316.485 kb on + strand, within truB at 316.680 kb on + strand, within truB at 316.681 kb on - strand, within truB at 316.681 kb on - strand, within truB at 316.704 kb on - strand, within truB at 316.708 kb on - strand, within truB at 316.708 kb on - strand, within truB at 316.708 kb on - strand, within truB at 316.763 kb on + strand, within truB at 316.763 kb on + strand, within truB at 316.763 kb on + strand, within truB at 316.764 kb on - strand, within truB at 316.764 kb on - strand, within truB at 316.764 kb on - strand, within truB at 316.764 kb on - strand, within truB at 316.832 kb on + strand, within truB at 316.883 kb on + strand, within truB at 316.923 kb on - strand, within truB at 316.923 kb on - strand, within truB at 316.960 kb on - strand, within truB at 317.038 kb on - strand, within truB at 317.192 kb on + strand, within truB at 317.232 kb on + strand at 317.233 kb on - strand at 317.244 kb on + strand at 317.300 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 315,590 + -1.3 315,596 + -0.7 315,693 - -1.1 315,693 - -1.0 315,768 + +0.1 315,791 + -0.4 315,792 - -0.1 315,792 - +0.3 315,792 - -0.4 315,848 - +0.7 315,856 + -1.6 315,857 - -1.2 315,857 - -0.6 316,485 + truB BNILDI_01610 0.14 +0.8 316,485 + truB BNILDI_01610 0.14 +0.9 316,485 + truB BNILDI_01610 0.14 -1.4 316,680 + truB BNILDI_01610 0.34 +0.4 316,681 - truB BNILDI_01610 0.35 +1.3 316,681 - truB BNILDI_01610 0.35 -0.2 316,704 - truB BNILDI_01610 0.37 -0.6 316,708 - truB BNILDI_01610 0.37 -1.0 316,708 - truB BNILDI_01610 0.37 -0.0 316,708 - truB BNILDI_01610 0.37 +0.6 316,763 + truB BNILDI_01610 0.43 -0.3 316,763 + truB BNILDI_01610 0.43 -0.7 316,763 + truB BNILDI_01610 0.43 +0.6 316,764 - truB BNILDI_01610 0.43 +0.4 316,764 - truB BNILDI_01610 0.43 +0.1 316,764 - truB BNILDI_01610 0.43 +0.5 316,764 - truB BNILDI_01610 0.43 -1.4 316,832 + truB BNILDI_01610 0.51 -1.7 316,883 + truB BNILDI_01610 0.56 +0.2 316,923 - truB BNILDI_01610 0.60 -0.2 316,923 - truB BNILDI_01610 0.60 -0.4 316,960 - truB BNILDI_01610 0.64 +1.2 317,038 - truB BNILDI_01610 0.72 -0.7 317,192 + truB BNILDI_01610 0.89 +0.4 317,232 + -0.8 317,233 - -1.3 317,244 + +0.4 317,300 - -0.0
Or see this region's nucleotide sequence