Strain Fitness in Escherichia coli ECRC62 around BNILDI_01525

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyraQ and yraR are separated by 72 nucleotidesyraR and yhbO are separated by 127 nucleotidesyhbO and BNILDI_01535 are separated by 153 nucleotides BNILDI_01520: yraQ - UPF0718 protein YraQ, at 300,215 to 301,255 yraQ BNILDI_01525: yraR - Putative NAD(P)-binding protein YraR, at 301,328 to 301,963 yraR BNILDI_01530: yhbO - protein/nucleic acid deglycase, at 302,091 to 302,609 yhbO BNILDI_01535: BNILDI_01535 - UPF0306 protein, at 302,763 to 303,032 _01535 Position (kb) 301 302Strain fitness (log2 ratio) -1 0 1 2 3at 300.449 kb on + strand, within yraQat 300.552 kb on + strand, within yraQat 300.629 kb on + strand, within yraQat 300.880 kb on + strand, within yraQat 301.039 kb on - strand, within yraQat 301.039 kb on - strand, within yraQat 301.051 kb on - strand, within yraQat 301.076 kb on - strand, within yraQat 301.097 kb on - strand, within yraQat 301.129 kb on + strand, within yraQat 301.164 kb on + strandat 301.255 kb on + strandat 301.255 kb on + strandat 301.272 kb on - strandat 301.276 kb on + strandat 301.277 kb on - strandat 301.298 kb on - strandat 301.458 kb on - strand, within yraRat 301.458 kb on - strand, within yraRat 301.505 kb on - strand, within yraRat 301.648 kb on + strand, within yraRat 301.648 kb on + strand, within yraRat 301.649 kb on - strand, within yraRat 301.829 kb on - strand, within yraRat 301.953 kb on - strandat 302.020 kb on - strandat 302.020 kb on - strandat 302.034 kb on + strandat 302.035 kb on - strandat 302.097 kb on - strandat 302.144 kb on + strand, within yhbOat 302.144 kb on + strand, within yhbOat 302.325 kb on + strand, within yhbOat 302.357 kb on + strand, within yhbOat 302.732 kb on - strandat 302.786 kb on + strandat 302.806 kb on - strand, within BNILDI_01535at 302.902 kb on + strand, within BNILDI_01535

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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300,449 + yraQ BNILDI_01520 0.22 +1.1
300,552 + yraQ BNILDI_01520 0.32 +1.2
300,629 + yraQ BNILDI_01520 0.40 +0.9
300,880 + yraQ BNILDI_01520 0.64 +1.0
301,039 - yraQ BNILDI_01520 0.79 -1.4
301,039 - yraQ BNILDI_01520 0.79 +1.3
301,051 - yraQ BNILDI_01520 0.80 +0.7
301,076 - yraQ BNILDI_01520 0.83 -0.2
301,097 - yraQ BNILDI_01520 0.85 -0.7
301,129 + yraQ BNILDI_01520 0.88 +0.5
301,164 + +0.0
301,255 + -0.4
301,255 + -0.9
301,272 - -0.2
301,276 + -0.4
301,277 - +0.6
301,298 - -0.5
301,458 - yraR BNILDI_01525 0.20 -0.3
301,458 - yraR BNILDI_01525 0.20 +2.8
301,505 - yraR BNILDI_01525 0.28 +0.2
301,648 + yraR BNILDI_01525 0.50 +0.5
301,648 + yraR BNILDI_01525 0.50 -0.8
301,649 - yraR BNILDI_01525 0.50 -0.9
301,829 - yraR BNILDI_01525 0.79 +0.2
301,953 - +0.3
302,020 - +0.2
302,020 - +0.4
302,034 + +0.6
302,035 - +1.0
302,097 - +0.9
302,144 + yhbO BNILDI_01530 0.10 +0.6
302,144 + yhbO BNILDI_01530 0.10 -0.0
302,325 + yhbO BNILDI_01530 0.45 +0.5
302,357 + yhbO BNILDI_01530 0.51 -0.1
302,732 - +0.8
302,786 + +0.7
302,806 - BNILDI_01535 0.16 +0.4
302,902 + BNILDI_01535 0.51 -0.1

Or see this region's nucleotide sequence