Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fimA and rsmI are separated by 42 nucleotides rsmI and lpoA are separated by 63 nucleotides lpoA and yraN overlap by 43 nucleotides yraN and diaA are separated by 19 nucleotides diaA and diaA are separated by 9 nucleotides
BNILDI_01490: fimA - fimbrial protein, at 294,459 to 295,550
fimA
BNILDI_01495: rsmI - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 295,593 to 296,453
rsmI
BNILDI_01500: lpoA - penicillin-binding protein activator LpoA, at 296,517 to 298,553
lpoA
BNILDI_01505: yraN - YraN family protein, at 298,511 to 298,906
yraN
BNILDI_01510: diaA - DnaA initiator-associating protein DiaA, at 298,926 to 299,516
diaA
BNILDI_01515: diaA - DnaA initiator-associating protein DiaA, at 299,526 to 300,101
diaA
Position (kb) 296
297
298
299 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 295.549 kb on - strand at 295.615 kb on + strand at 295.616 kb on - strand at 295.619 kb on + strand at 295.619 kb on + strand at 295.622 kb on - strand at 295.695 kb on + strand, within rsmI at 295.696 kb on - strand, within rsmI at 295.883 kb on - strand, within rsmI at 295.922 kb on + strand, within rsmI at 296.033 kb on - strand, within rsmI at 296.078 kb on + strand, within rsmI at 296.079 kb on - strand, within rsmI at 296.132 kb on + strand, within rsmI at 296.133 kb on - strand, within rsmI at 296.133 kb on - strand, within rsmI at 296.133 kb on - strand, within rsmI at 296.159 kb on + strand, within rsmI at 296.160 kb on - strand, within rsmI at 296.249 kb on + strand, within rsmI at 296.352 kb on + strand, within rsmI at 296.353 kb on - strand, within rsmI at 296.353 kb on - strand, within rsmI at 296.353 kb on - strand, within rsmI at 296.403 kb on + strand at 296.404 kb on - strand at 296.411 kb on - strand at 296.430 kb on - strand at 296.628 kb on + strand at 296.628 kb on + strand at 296.629 kb on - strand at 296.630 kb on + strand at 296.631 kb on - strand at 296.631 kb on - strand at 296.716 kb on + strand at 296.716 kb on + strand at 296.747 kb on + strand, within lpoA at 296.747 kb on + strand, within lpoA at 296.841 kb on - strand, within lpoA at 297.113 kb on + strand, within lpoA at 297.259 kb on + strand, within lpoA at 297.329 kb on - strand, within lpoA at 297.424 kb on + strand, within lpoA at 297.424 kb on + strand, within lpoA at 297.603 kb on - strand, within lpoA at 297.631 kb on + strand, within lpoA at 297.632 kb on - strand, within lpoA at 297.632 kb on - strand, within lpoA at 297.704 kb on + strand, within lpoA at 297.705 kb on - strand, within lpoA at 297.770 kb on + strand, within lpoA at 297.770 kb on + strand, within lpoA at 297.777 kb on + strand, within lpoA at 297.824 kb on + strand, within lpoA at 297.839 kb on + strand, within lpoA at 297.970 kb on + strand, within lpoA at 297.984 kb on - strand, within lpoA at 298.131 kb on + strand, within lpoA at 298.132 kb on - strand, within lpoA at 298.132 kb on - strand, within lpoA at 298.215 kb on + strand, within lpoA at 298.377 kb on + strand at 298.537 kb on + strand at 298.537 kb on + strand at 298.538 kb on - strand at 298.704 kb on + strand, within yraN at 298.704 kb on + strand, within yraN at 298.704 kb on + strand, within yraN at 298.705 kb on - strand, within yraN at 298.904 kb on + strand at 298.904 kb on + strand at 298.904 kb on + strand at 298.904 kb on + strand at 298.904 kb on + strand at 298.905 kb on - strand at 298.908 kb on + strand at 298.908 kb on + strand at 299.165 kb on + strand, within diaA at 299.165 kb on + strand, within diaA at 299.171 kb on + strand, within diaA at 299.172 kb on - strand, within diaA at 299.206 kb on + strand, within diaA at 299.207 kb on - strand, within diaA at 299.260 kb on + strand, within diaA at 299.260 kb on + strand, within diaA at 299.260 kb on + strand, within diaA at 299.261 kb on - strand, within diaA at 299.261 kb on - strand, within diaA at 299.261 kb on - strand, within diaA at 299.261 kb on - strand, within diaA at 299.261 kb on - strand, within diaA at 299.261 kb on - strand, within diaA at 299.261 kb on - strand, within diaA at 299.302 kb on + strand, within diaA at 299.302 kb on + strand, within diaA at 299.339 kb on + strand, within diaA at 299.427 kb on - strand, within diaA at 299.451 kb on - strand, within diaA at 299.451 kb on - strand, within diaA at 299.451 kb on - strand, within diaA at 299.523 kb on + strand at 299.524 kb on - strand at 299.524 kb on - strand at 299.524 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 295,549 - -0.6 295,615 + +1.0 295,616 - -1.0 295,619 + -0.8 295,619 + +0.3 295,622 - +0.3 295,695 + rsmI BNILDI_01495 0.12 -2.5 295,696 - rsmI BNILDI_01495 0.12 -0.1 295,883 - rsmI BNILDI_01495 0.34 -2.3 295,922 + rsmI BNILDI_01495 0.38 -2.8 296,033 - rsmI BNILDI_01495 0.51 -0.7 296,078 + rsmI BNILDI_01495 0.56 -0.6 296,079 - rsmI BNILDI_01495 0.56 -0.2 296,132 + rsmI BNILDI_01495 0.63 -0.6 296,133 - rsmI BNILDI_01495 0.63 +1.4 296,133 - rsmI BNILDI_01495 0.63 +1.4 296,133 - rsmI BNILDI_01495 0.63 +0.7 296,159 + rsmI BNILDI_01495 0.66 -0.6 296,160 - rsmI BNILDI_01495 0.66 +0.3 296,249 + rsmI BNILDI_01495 0.76 -0.9 296,352 + rsmI BNILDI_01495 0.88 -0.4 296,353 - rsmI BNILDI_01495 0.88 -0.9 296,353 - rsmI BNILDI_01495 0.88 +0.8 296,353 - rsmI BNILDI_01495 0.88 -0.2 296,403 + +1.2 296,404 - -0.8 296,411 - -0.3 296,430 - +1.4 296,628 + -0.7 296,628 + +0.0 296,629 - +0.2 296,630 + -0.2 296,631 - -0.1 296,631 - -2.5 296,716 + +0.9 296,716 + -0.5 296,747 + lpoA BNILDI_01500 0.11 -0.0 296,747 + lpoA BNILDI_01500 0.11 -0.1 296,841 - lpoA BNILDI_01500 0.16 -2.5 297,113 + lpoA BNILDI_01500 0.29 -0.4 297,259 + lpoA BNILDI_01500 0.36 -0.0 297,329 - lpoA BNILDI_01500 0.40 -0.1 297,424 + lpoA BNILDI_01500 0.45 -1.3 297,424 + lpoA BNILDI_01500 0.45 -1.4 297,603 - lpoA BNILDI_01500 0.53 +0.1 297,631 + lpoA BNILDI_01500 0.55 +0.2 297,632 - lpoA BNILDI_01500 0.55 -0.5 297,632 - lpoA BNILDI_01500 0.55 -0.7 297,704 + lpoA BNILDI_01500 0.58 +0.1 297,705 - lpoA BNILDI_01500 0.58 -0.4 297,770 + lpoA BNILDI_01500 0.62 +0.4 297,770 + lpoA BNILDI_01500 0.62 -0.3 297,777 + lpoA BNILDI_01500 0.62 +0.1 297,824 + lpoA BNILDI_01500 0.64 +0.5 297,839 + lpoA BNILDI_01500 0.65 -1.4 297,970 + lpoA BNILDI_01500 0.71 -0.1 297,984 - lpoA BNILDI_01500 0.72 -0.9 298,131 + lpoA BNILDI_01500 0.79 -0.1 298,132 - lpoA BNILDI_01500 0.79 -0.8 298,132 - lpoA BNILDI_01500 0.79 -0.3 298,215 + lpoA BNILDI_01500 0.83 -0.6 298,377 + -0.7 298,537 + -1.1 298,537 + -0.2 298,538 - +0.3 298,704 + yraN BNILDI_01505 0.49 -0.6 298,704 + yraN BNILDI_01505 0.49 -1.6 298,704 + yraN BNILDI_01505 0.49 +0.3 298,705 - yraN BNILDI_01505 0.49 -1.4 298,904 + -0.1 298,904 + -1.1 298,904 + +0.2 298,904 + -0.7 298,904 + +0.7 298,905 - +0.8 298,908 + -0.5 298,908 + -0.1 299,165 + diaA BNILDI_01510 0.40 +0.3 299,165 + diaA BNILDI_01510 0.40 -0.1 299,171 + diaA BNILDI_01510 0.41 +0.1 299,172 - diaA BNILDI_01510 0.42 +1.5 299,206 + diaA BNILDI_01510 0.47 -0.4 299,207 - diaA BNILDI_01510 0.48 +1.0 299,260 + diaA BNILDI_01510 0.57 +1.8 299,260 + diaA BNILDI_01510 0.57 -1.9 299,260 + diaA BNILDI_01510 0.57 +2.2 299,261 - diaA BNILDI_01510 0.57 -0.0 299,261 - diaA BNILDI_01510 0.57 +0.1 299,261 - diaA BNILDI_01510 0.57 -0.5 299,261 - diaA BNILDI_01510 0.57 +0.2 299,261 - diaA BNILDI_01510 0.57 -0.2 299,261 - diaA BNILDI_01510 0.57 +2.2 299,261 - diaA BNILDI_01510 0.57 +0.9 299,302 + diaA BNILDI_01510 0.64 +2.8 299,302 + diaA BNILDI_01510 0.64 +0.3 299,339 + diaA BNILDI_01510 0.70 +0.5 299,427 - diaA BNILDI_01510 0.85 +0.9 299,451 - diaA BNILDI_01510 0.89 +0.3 299,451 - diaA BNILDI_01510 0.89 -0.8 299,451 - diaA BNILDI_01510 0.89 +0.2 299,523 + -0.2 299,524 - +0.4 299,524 - +1.3 299,524 - -0.3
Or see this region's nucleotide sequence