Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yraJ and fimA are separated by 10 nucleotides fimA and rsmI are separated by 42 nucleotides rsmI and lpoA are separated by 63 nucleotides
BNILDI_01485: yraJ - Outer membrane usher protein YraJ, at 291,932 to 294,448
yraJ
BNILDI_01490: fimA - fimbrial protein, at 294,459 to 295,550
fimA
BNILDI_01495: rsmI - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 295,593 to 296,453
rsmI
BNILDI_01500: lpoA - penicillin-binding protein activator LpoA, at 296,517 to 298,553
lpoA
Position (kb) 294
295
296 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 293.474 kb on + strand, within yraJ at 293.475 kb on - strand, within yraJ at 293.475 kb on - strand, within yraJ at 293.498 kb on + strand, within yraJ at 293.527 kb on + strand, within yraJ at 293.528 kb on - strand, within yraJ at 293.580 kb on - strand, within yraJ at 293.580 kb on - strand, within yraJ at 293.580 kb on - strand, within yraJ at 293.585 kb on + strand, within yraJ at 293.586 kb on - strand, within yraJ at 293.608 kb on + strand, within yraJ at 293.646 kb on + strand, within yraJ at 293.647 kb on - strand, within yraJ at 293.763 kb on - strand, within yraJ at 293.764 kb on + strand, within yraJ at 293.764 kb on + strand, within yraJ at 293.800 kb on + strand, within yraJ at 293.800 kb on + strand, within yraJ at 293.800 kb on + strand, within yraJ at 293.801 kb on - strand, within yraJ at 293.806 kb on + strand, within yraJ at 293.888 kb on + strand, within yraJ at 293.942 kb on + strand, within yraJ at 294.020 kb on - strand, within yraJ at 294.051 kb on - strand, within yraJ at 294.063 kb on - strand, within yraJ at 294.063 kb on - strand, within yraJ at 294.084 kb on + strand, within yraJ at 294.088 kb on + strand, within yraJ at 294.088 kb on + strand, within yraJ at 294.088 kb on + strand, within yraJ at 294.091 kb on + strand, within yraJ at 294.198 kb on + strand at 294.205 kb on + strand at 294.205 kb on + strand at 294.206 kb on - strand at 294.300 kb on + strand at 294.303 kb on + strand at 294.303 kb on + strand at 294.303 kb on + strand at 294.303 kb on + strand at 294.304 kb on - strand at 294.304 kb on - strand at 294.305 kb on + strand at 294.306 kb on - strand at 294.306 kb on - strand at 294.326 kb on - strand at 294.345 kb on + strand at 294.346 kb on - strand at 294.346 kb on - strand at 294.388 kb on + strand at 294.388 kb on + strand at 294.391 kb on + strand at 294.420 kb on + strand at 294.421 kb on - strand at 294.423 kb on + strand at 294.423 kb on + strand at 294.423 kb on + strand at 294.424 kb on - strand at 294.424 kb on - strand at 294.476 kb on + strand at 294.476 kb on + strand at 294.476 kb on + strand at 294.477 kb on - strand at 294.478 kb on + strand at 294.514 kb on - strand at 294.565 kb on - strand at 294.626 kb on + strand, within fimA at 294.640 kb on + strand, within fimA at 294.641 kb on - strand, within fimA at 294.644 kb on + strand, within fimA at 294.645 kb on - strand, within fimA at 294.645 kb on - strand, within fimA at 294.703 kb on - strand, within fimA at 294.703 kb on - strand, within fimA at 294.703 kb on - strand, within fimA at 294.703 kb on - strand, within fimA at 294.703 kb on - strand, within fimA at 294.705 kb on - strand, within fimA at 294.718 kb on + strand, within fimA at 294.723 kb on - strand, within fimA at 294.723 kb on - strand, within fimA at 294.723 kb on - strand, within fimA at 294.751 kb on - strand, within fimA at 294.776 kb on + strand, within fimA at 294.777 kb on - strand, within fimA at 294.787 kb on + strand, within fimA at 294.787 kb on + strand, within fimA at 294.856 kb on + strand, within fimA at 294.857 kb on - strand, within fimA at 294.857 kb on - strand, within fimA at 294.872 kb on - strand, within fimA at 294.947 kb on + strand, within fimA at 294.948 kb on - strand, within fimA at 294.964 kb on - strand, within fimA at 295.023 kb on - strand, within fimA at 295.079 kb on - strand, within fimA at 295.145 kb on + strand, within fimA at 295.145 kb on + strand, within fimA at 295.146 kb on - strand, within fimA at 295.149 kb on - strand, within fimA at 295.149 kb on - strand, within fimA at 295.154 kb on + strand, within fimA at 295.214 kb on + strand, within fimA at 295.239 kb on + strand, within fimA at 295.239 kb on + strand, within fimA at 295.240 kb on - strand, within fimA at 295.240 kb on - strand, within fimA at 295.240 kb on - strand, within fimA at 295.310 kb on - strand, within fimA at 295.310 kb on - strand, within fimA at 295.403 kb on + strand, within fimA at 295.403 kb on + strand, within fimA at 295.549 kb on - strand at 295.615 kb on + strand at 295.616 kb on - strand at 295.619 kb on + strand at 295.619 kb on + strand at 295.622 kb on - strand at 295.695 kb on + strand, within rsmI at 295.696 kb on - strand, within rsmI at 295.883 kb on - strand, within rsmI at 295.922 kb on + strand, within rsmI at 296.033 kb on - strand, within rsmI at 296.078 kb on + strand, within rsmI at 296.079 kb on - strand, within rsmI at 296.132 kb on + strand, within rsmI at 296.133 kb on - strand, within rsmI at 296.133 kb on - strand, within rsmI at 296.133 kb on - strand, within rsmI at 296.159 kb on + strand, within rsmI at 296.160 kb on - strand, within rsmI at 296.249 kb on + strand, within rsmI at 296.352 kb on + strand, within rsmI at 296.353 kb on - strand, within rsmI at 296.353 kb on - strand, within rsmI at 296.353 kb on - strand, within rsmI at 296.403 kb on + strand at 296.404 kb on - strand at 296.411 kb on - strand at 296.430 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 293,474 + yraJ BNILDI_01485 0.61 +1.7 293,475 - yraJ BNILDI_01485 0.61 +0.3 293,475 - yraJ BNILDI_01485 0.61 -1.1 293,498 + yraJ BNILDI_01485 0.62 -0.0 293,527 + yraJ BNILDI_01485 0.63 +0.4 293,528 - yraJ BNILDI_01485 0.63 +0.4 293,580 - yraJ BNILDI_01485 0.65 +0.8 293,580 - yraJ BNILDI_01485 0.65 -0.3 293,580 - yraJ BNILDI_01485 0.65 -1.1 293,585 + yraJ BNILDI_01485 0.66 +0.3 293,586 - yraJ BNILDI_01485 0.66 +0.2 293,608 + yraJ BNILDI_01485 0.67 -0.4 293,646 + yraJ BNILDI_01485 0.68 -0.7 293,647 - yraJ BNILDI_01485 0.68 -2.8 293,763 - yraJ BNILDI_01485 0.73 +0.5 293,764 + yraJ BNILDI_01485 0.73 +0.4 293,764 + yraJ BNILDI_01485 0.73 +0.0 293,800 + yraJ BNILDI_01485 0.74 +2.9 293,800 + yraJ BNILDI_01485 0.74 +0.0 293,800 + yraJ BNILDI_01485 0.74 -0.5 293,801 - yraJ BNILDI_01485 0.74 +0.2 293,806 + yraJ BNILDI_01485 0.74 +1.0 293,888 + yraJ BNILDI_01485 0.78 -0.4 293,942 + yraJ BNILDI_01485 0.80 -0.2 294,020 - yraJ BNILDI_01485 0.83 +0.1 294,051 - yraJ BNILDI_01485 0.84 +0.1 294,063 - yraJ BNILDI_01485 0.85 +0.3 294,063 - yraJ BNILDI_01485 0.85 -0.0 294,084 + yraJ BNILDI_01485 0.85 -0.3 294,088 + yraJ BNILDI_01485 0.86 -1.1 294,088 + yraJ BNILDI_01485 0.86 -0.1 294,088 + yraJ BNILDI_01485 0.86 +0.3 294,091 + yraJ BNILDI_01485 0.86 -0.3 294,198 + -0.3 294,205 + -0.3 294,205 + +0.2 294,206 - +0.4 294,300 + -3.1 294,303 + +2.0 294,303 + +0.8 294,303 + -2.3 294,303 + +0.9 294,304 - +0.6 294,304 - +1.0 294,305 + +0.5 294,306 - +1.2 294,306 - +0.2 294,326 - -2.5 294,345 + -0.1 294,346 - -0.7 294,346 - -1.5 294,388 + -1.7 294,388 + +0.8 294,391 + -0.9 294,420 + -0.0 294,421 - -0.4 294,423 + +0.5 294,423 + -0.1 294,423 + +0.1 294,424 - -1.3 294,424 - -0.2 294,476 + -0.1 294,476 + -0.0 294,476 + +1.4 294,477 - +0.6 294,478 + -0.5 294,514 - +2.2 294,565 - +0.4 294,626 + fimA BNILDI_01490 0.15 -0.4 294,640 + fimA BNILDI_01490 0.17 -0.0 294,641 - fimA BNILDI_01490 0.17 +0.3 294,644 + fimA BNILDI_01490 0.17 +0.3 294,645 - fimA BNILDI_01490 0.17 -1.6 294,645 - fimA BNILDI_01490 0.17 +0.3 294,703 - fimA BNILDI_01490 0.22 -0.2 294,703 - fimA BNILDI_01490 0.22 +0.1 294,703 - fimA BNILDI_01490 0.22 +2.1 294,703 - fimA BNILDI_01490 0.22 +0.4 294,703 - fimA BNILDI_01490 0.22 -0.1 294,705 - fimA BNILDI_01490 0.23 +1.0 294,718 + fimA BNILDI_01490 0.24 +0.7 294,723 - fimA BNILDI_01490 0.24 -0.2 294,723 - fimA BNILDI_01490 0.24 -0.2 294,723 - fimA BNILDI_01490 0.24 +0.1 294,751 - fimA BNILDI_01490 0.27 -0.3 294,776 + fimA BNILDI_01490 0.29 +0.3 294,777 - fimA BNILDI_01490 0.29 -0.7 294,787 + fimA BNILDI_01490 0.30 -0.3 294,787 + fimA BNILDI_01490 0.30 -0.8 294,856 + fimA BNILDI_01490 0.36 +0.1 294,857 - fimA BNILDI_01490 0.36 +0.1 294,857 - fimA BNILDI_01490 0.36 +0.0 294,872 - fimA BNILDI_01490 0.38 -0.0 294,947 + fimA BNILDI_01490 0.45 -0.6 294,948 - fimA BNILDI_01490 0.45 -0.4 294,964 - fimA BNILDI_01490 0.46 -0.7 295,023 - fimA BNILDI_01490 0.52 +0.7 295,079 - fimA BNILDI_01490 0.57 -3.5 295,145 + fimA BNILDI_01490 0.63 +0.1 295,145 + fimA BNILDI_01490 0.63 +0.7 295,146 - fimA BNILDI_01490 0.63 +0.3 295,149 - fimA BNILDI_01490 0.63 +1.3 295,149 - fimA BNILDI_01490 0.63 -2.2 295,154 + fimA BNILDI_01490 0.64 +1.9 295,214 + fimA BNILDI_01490 0.69 +1.1 295,239 + fimA BNILDI_01490 0.71 -1.3 295,239 + fimA BNILDI_01490 0.71 +0.4 295,240 - fimA BNILDI_01490 0.72 -1.6 295,240 - fimA BNILDI_01490 0.72 -0.1 295,240 - fimA BNILDI_01490 0.72 -1.4 295,310 - fimA BNILDI_01490 0.78 +0.0 295,310 - fimA BNILDI_01490 0.78 +0.3 295,403 + fimA BNILDI_01490 0.86 -0.9 295,403 + fimA BNILDI_01490 0.86 +1.0 295,549 - -0.6 295,615 + +1.0 295,616 - -1.0 295,619 + -0.8 295,619 + +0.3 295,622 - +0.3 295,695 + rsmI BNILDI_01495 0.12 -2.5 295,696 - rsmI BNILDI_01495 0.12 -0.1 295,883 - rsmI BNILDI_01495 0.34 -2.3 295,922 + rsmI BNILDI_01495 0.38 -2.8 296,033 - rsmI BNILDI_01495 0.51 -0.7 296,078 + rsmI BNILDI_01495 0.56 -0.6 296,079 - rsmI BNILDI_01495 0.56 -0.2 296,132 + rsmI BNILDI_01495 0.63 -0.6 296,133 - rsmI BNILDI_01495 0.63 +1.4 296,133 - rsmI BNILDI_01495 0.63 +1.4 296,133 - rsmI BNILDI_01495 0.63 +0.7 296,159 + rsmI BNILDI_01495 0.66 -0.6 296,160 - rsmI BNILDI_01495 0.66 +0.3 296,249 + rsmI BNILDI_01495 0.76 -0.9 296,352 + rsmI BNILDI_01495 0.88 -0.4 296,353 - rsmI BNILDI_01495 0.88 -0.9 296,353 - rsmI BNILDI_01495 0.88 +0.8 296,353 - rsmI BNILDI_01495 0.88 -0.2 296,403 + +1.2 296,404 - -0.8 296,411 - -0.3 296,430 - +1.4
Or see this region's nucleotide sequence