Strain Fitness in Escherichia coli ECRC62 around BNILDI_01385

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgarR and garL are separated by 29 nucleotidesgarL and garP are separated by 15 nucleotides BNILDI_01380: garR - 2-hydroxy-3-oxopropionate reductase, at 272,887 to 273,777 garR BNILDI_01385: garL - 2-dehydro-3-deoxyglucarate aldolase, at 273,807 to 274,577 garL BNILDI_01390: garP - galactarate/glucarate/glycerate transporter GarP, at 274,593 to 275,927 garP Position (kb) 273 274 275Strain fitness (log2 ratio) -2 -1 0 1at 272.921 kb on + strandat 272.922 kb on - strandat 272.924 kb on + strandat 272.924 kb on + strandat 272.925 kb on - strandat 272.940 kb on + strandat 272.957 kb on - strandat 273.036 kb on + strand, within garRat 273.060 kb on + strand, within garRat 273.060 kb on + strand, within garRat 273.063 kb on + strand, within garRat 273.168 kb on - strand, within garRat 273.231 kb on + strand, within garRat 273.332 kb on + strand, within garRat 273.335 kb on + strand, within garRat 273.335 kb on + strand, within garRat 273.336 kb on - strand, within garRat 273.336 kb on - strand, within garRat 273.429 kb on + strand, within garRat 273.589 kb on + strand, within garRat 273.590 kb on - strand, within garRat 273.628 kb on - strand, within garRat 273.667 kb on - strand, within garRat 273.667 kb on - strand, within garRat 273.667 kb on - strand, within garRat 273.723 kb on + strandat 273.993 kb on + strand, within garLat 274.061 kb on + strand, within garLat 274.069 kb on - strand, within garLat 274.187 kb on + strand, within garLat 274.188 kb on - strand, within garLat 274.522 kb on - strandat 274.584 kb on + strandat 274.585 kb on - strandat 274.585 kb on - strandat 274.594 kb on + strandat 274.594 kb on + strandat 274.611 kb on - strandat 274.630 kb on - strandat 274.900 kb on + strand, within garPat 274.900 kb on + strand, within garPat 274.900 kb on + strand, within garPat 274.901 kb on - strand, within garPat 274.908 kb on + strand, within garPat 274.909 kb on - strand, within garPat 274.909 kb on - strand, within garPat 274.955 kb on + strand, within garPat 274.955 kb on + strand, within garPat 274.955 kb on + strand, within garPat 274.956 kb on - strand, within garPat 275.150 kb on - strand, within garPat 275.203 kb on + strand, within garPat 275.203 kb on + strand, within garPat 275.203 kb on + strand, within garPat 275.306 kb on + strand, within garPat 275.306 kb on + strand, within garPat 275.307 kb on - strand, within garPat 275.456 kb on - strand, within garPat 275.468 kb on + strand, within garPat 275.469 kb on - strand, within garPat 275.568 kb on - strand, within garP

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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272,921 + -0.9
272,922 - -0.1
272,924 + +1.0
272,924 + -0.7
272,925 - -0.5
272,940 + +0.4
272,957 - +0.4
273,036 + garR BNILDI_01380 0.17 -0.6
273,060 + garR BNILDI_01380 0.19 -1.9
273,060 + garR BNILDI_01380 0.19 +0.7
273,063 + garR BNILDI_01380 0.20 -0.1
273,168 - garR BNILDI_01380 0.32 -0.3
273,231 + garR BNILDI_01380 0.39 -1.1
273,332 + garR BNILDI_01380 0.50 -2.0
273,335 + garR BNILDI_01380 0.50 +0.1
273,335 + garR BNILDI_01380 0.50 -0.4
273,336 - garR BNILDI_01380 0.50 -2.1
273,336 - garR BNILDI_01380 0.50 -2.1
273,429 + garR BNILDI_01380 0.61 -0.4
273,589 + garR BNILDI_01380 0.79 -0.8
273,590 - garR BNILDI_01380 0.79 +0.1
273,628 - garR BNILDI_01380 0.83 -0.8
273,667 - garR BNILDI_01380 0.88 +0.5
273,667 - garR BNILDI_01380 0.88 -0.7
273,667 - garR BNILDI_01380 0.88 -0.1
273,723 + +0.2
273,993 + garL BNILDI_01385 0.24 -1.0
274,061 + garL BNILDI_01385 0.33 -1.3
274,069 - garL BNILDI_01385 0.34 +0.0
274,187 + garL BNILDI_01385 0.49 +0.1
274,188 - garL BNILDI_01385 0.49 -0.6
274,522 - -0.5
274,584 + +0.2
274,585 - -0.2
274,585 - -0.2
274,594 + +0.4
274,594 + -0.0
274,611 - -0.2
274,630 - -1.0
274,900 + garP BNILDI_01390 0.23 +0.8
274,900 + garP BNILDI_01390 0.23 +0.2
274,900 + garP BNILDI_01390 0.23 -0.2
274,901 - garP BNILDI_01390 0.23 -0.3
274,908 + garP BNILDI_01390 0.24 +0.9
274,909 - garP BNILDI_01390 0.24 +0.9
274,909 - garP BNILDI_01390 0.24 +1.0
274,955 + garP BNILDI_01390 0.27 +0.8
274,955 + garP BNILDI_01390 0.27 -0.4
274,955 + garP BNILDI_01390 0.27 -0.4
274,956 - garP BNILDI_01390 0.27 -0.2
275,150 - garP BNILDI_01390 0.42 +0.7
275,203 + garP BNILDI_01390 0.46 -1.0
275,203 + garP BNILDI_01390 0.46 -1.1
275,203 + garP BNILDI_01390 0.46 +0.2
275,306 + garP BNILDI_01390 0.53 -0.1
275,306 + garP BNILDI_01390 0.53 -0.2
275,307 - garP BNILDI_01390 0.53 -0.5
275,456 - garP BNILDI_01390 0.65 -0.1
275,468 + garP BNILDI_01390 0.66 +0.2
275,469 - garP BNILDI_01390 0.66 -0.6
275,568 - garP BNILDI_01390 0.73 +0.3

Or see this region's nucleotide sequence