Strain Fitness in Escherichia coli ECRC62 around BNILDI_01375

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgarK and garR are separated by 96 nucleotides BNILDI_01375: garK - glycerate 2-kinase, at 271,645 to 272,790 garK BNILDI_01380: garR - 2-hydroxy-3-oxopropionate reductase, at 272,887 to 273,777 garR Position (kb) 271 272 273Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 270.651 kb on + strandat 270.671 kb on + strandat 270.672 kb on - strandat 270.891 kb on + strandat 270.892 kb on - strandat 270.914 kb on - strandat 271.160 kb on + strandat 271.226 kb on + strandat 271.690 kb on - strandat 271.690 kb on - strandat 271.690 kb on - strandat 271.708 kb on - strandat 271.743 kb on + strandat 271.744 kb on - strandat 271.747 kb on + strandat 271.747 kb on + strandat 271.748 kb on - strandat 271.748 kb on - strandat 271.748 kb on - strandat 271.792 kb on + strand, within garKat 271.792 kb on + strand, within garKat 271.843 kb on - strand, within garKat 271.843 kb on - strand, within garKat 271.847 kb on + strand, within garKat 271.893 kb on + strand, within garKat 271.894 kb on - strand, within garKat 271.894 kb on - strand, within garKat 271.948 kb on - strand, within garKat 271.948 kb on - strand, within garKat 272.105 kb on + strand, within garKat 272.266 kb on - strand, within garKat 272.286 kb on + strand, within garKat 272.287 kb on - strand, within garKat 272.403 kb on + strand, within garKat 272.403 kb on + strand, within garKat 272.440 kb on + strand, within garKat 272.494 kb on + strand, within garKat 272.684 kb on + strandat 272.790 kb on + strandat 272.791 kb on - strandat 272.794 kb on + strandat 272.794 kb on + strandat 272.795 kb on - strandat 272.795 kb on - strandat 272.795 kb on - strandat 272.921 kb on + strandat 272.922 kb on - strandat 272.924 kb on + strandat 272.924 kb on + strandat 272.925 kb on - strandat 272.940 kb on + strandat 272.957 kb on - strandat 273.036 kb on + strand, within garRat 273.060 kb on + strand, within garRat 273.060 kb on + strand, within garRat 273.063 kb on + strand, within garRat 273.168 kb on - strand, within garRat 273.231 kb on + strand, within garRat 273.332 kb on + strand, within garRat 273.335 kb on + strand, within garRat 273.335 kb on + strand, within garRat 273.336 kb on - strand, within garRat 273.336 kb on - strand, within garRat 273.429 kb on + strand, within garRat 273.589 kb on + strand, within garRat 273.590 kb on - strand, within garRat 273.628 kb on - strand, within garRat 273.667 kb on - strand, within garRat 273.667 kb on - strand, within garRat 273.667 kb on - strand, within garRat 273.723 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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270,651 + +0.0
270,671 + +0.4
270,672 - +0.4
270,891 + +0.6
270,892 - -1.4
270,914 - +1.0
271,160 + -1.5
271,226 + +0.5
271,690 - +0.4
271,690 - -0.5
271,690 - -1.5
271,708 - -0.1
271,743 + +0.7
271,744 - +1.3
271,747 + +1.2
271,747 + +0.9
271,748 - +0.8
271,748 - +0.4
271,748 - +1.8
271,792 + garK BNILDI_01375 0.13 -0.4
271,792 + garK BNILDI_01375 0.13 +0.3
271,843 - garK BNILDI_01375 0.17 +0.1
271,843 - garK BNILDI_01375 0.17 +0.0
271,847 + garK BNILDI_01375 0.18 -0.5
271,893 + garK BNILDI_01375 0.22 -0.1
271,894 - garK BNILDI_01375 0.22 -0.7
271,894 - garK BNILDI_01375 0.22 -0.2
271,948 - garK BNILDI_01375 0.26 +0.5
271,948 - garK BNILDI_01375 0.26 -0.2
272,105 + garK BNILDI_01375 0.40 +1.2
272,266 - garK BNILDI_01375 0.54 +0.3
272,286 + garK BNILDI_01375 0.56 +0.2
272,287 - garK BNILDI_01375 0.56 +0.0
272,403 + garK BNILDI_01375 0.66 -0.9
272,403 + garK BNILDI_01375 0.66 +0.7
272,440 + garK BNILDI_01375 0.69 -0.7
272,494 + garK BNILDI_01375 0.74 +0.6
272,684 + +0.9
272,790 + +0.1
272,791 - +0.2
272,794 + -3.0
272,794 + +0.2
272,795 - +0.2
272,795 - -0.3
272,795 - +0.4
272,921 + -0.9
272,922 - -0.1
272,924 + +1.0
272,924 + -0.7
272,925 - -0.5
272,940 + +0.4
272,957 - +0.4
273,036 + garR BNILDI_01380 0.17 -0.6
273,060 + garR BNILDI_01380 0.19 -1.9
273,060 + garR BNILDI_01380 0.19 +0.7
273,063 + garR BNILDI_01380 0.20 -0.1
273,168 - garR BNILDI_01380 0.32 -0.3
273,231 + garR BNILDI_01380 0.39 -1.1
273,332 + garR BNILDI_01380 0.50 -2.0
273,335 + garR BNILDI_01380 0.50 +0.1
273,335 + garR BNILDI_01380 0.50 -0.4
273,336 - garR BNILDI_01380 0.50 -2.1
273,336 - garR BNILDI_01380 0.50 -2.1
273,429 + garR BNILDI_01380 0.61 -0.4
273,589 + garR BNILDI_01380 0.79 -0.8
273,590 - garR BNILDI_01380 0.79 +0.1
273,628 - garR BNILDI_01380 0.83 -0.8
273,667 - garR BNILDI_01380 0.88 +0.5
273,667 - garR BNILDI_01380 0.88 -0.7
273,667 - garR BNILDI_01380 0.88 -0.1
273,723 + +0.2

Or see this region's nucleotide sequence