Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ebgR and ebgA are separated by 183 nucleotides ebgA and ebgC overlap by 4 nucleotides ebgC and ygjI are separated by 62 nucleotides
BNILDI_01110: ebgR - transcriptional regulator EbgR, at 215,096 to 216,079
ebgR
BNILDI_01115: ebgA - beta-galactosidase subunit alpha, at 216,263 to 219,355
ebgA
BNILDI_01120: ebgC - beta-galactosidase subunit beta, at 219,352 to 219,801
ebgC
BNILDI_01125: ygjI - Inner membrane transporter YgjI, at 219,864 to 221,297
ygjI
Position (kb) 216
217
218
219
220 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 215.287 kb on + strand, within ebgR at 215.288 kb on - strand, within ebgR at 215.300 kb on + strand, within ebgR at 215.300 kb on + strand, within ebgR at 215.301 kb on - strand, within ebgR at 215.307 kb on - strand, within ebgR at 215.337 kb on - strand, within ebgR at 215.451 kb on + strand, within ebgR at 215.509 kb on + strand, within ebgR at 215.547 kb on - strand, within ebgR at 215.601 kb on - strand, within ebgR at 215.632 kb on + strand, within ebgR at 215.841 kb on + strand, within ebgR at 216.209 kb on - strand at 216.217 kb on + strand at 216.218 kb on - strand at 216.321 kb on - strand at 216.332 kb on + strand at 216.462 kb on + strand at 216.481 kb on + strand at 216.532 kb on + strand at 216.533 kb on - strand at 216.675 kb on - strand, within ebgA at 216.686 kb on + strand, within ebgA at 216.686 kb on + strand, within ebgA at 216.686 kb on + strand, within ebgA at 216.686 kb on + strand, within ebgA at 216.687 kb on - strand, within ebgA at 216.701 kb on + strand, within ebgA at 216.811 kb on + strand, within ebgA at 216.811 kb on + strand, within ebgA at 216.812 kb on - strand, within ebgA at 216.812 kb on - strand, within ebgA at 216.816 kb on - strand, within ebgA at 216.832 kb on + strand, within ebgA at 216.832 kb on + strand, within ebgA at 216.832 kb on + strand, within ebgA at 216.833 kb on - strand, within ebgA at 216.896 kb on - strand, within ebgA at 216.932 kb on + strand, within ebgA at 216.933 kb on - strand, within ebgA at 216.933 kb on - strand, within ebgA at 217.008 kb on - strand, within ebgA at 217.008 kb on - strand, within ebgA at 217.010 kb on - strand, within ebgA at 217.096 kb on + strand, within ebgA at 217.136 kb on + strand, within ebgA at 217.219 kb on + strand, within ebgA at 217.260 kb on - strand, within ebgA at 217.367 kb on - strand, within ebgA at 217.367 kb on - strand, within ebgA at 217.367 kb on - strand, within ebgA at 217.480 kb on + strand, within ebgA at 217.641 kb on - strand, within ebgA at 217.641 kb on - strand, within ebgA at 217.800 kb on - strand, within ebgA at 217.800 kb on - strand, within ebgA at 217.856 kb on + strand, within ebgA at 217.858 kb on + strand, within ebgA at 217.871 kb on - strand, within ebgA at 217.982 kb on + strand, within ebgA at 217.982 kb on + strand, within ebgA at 217.982 kb on + strand, within ebgA at 217.982 kb on + strand, within ebgA at 217.983 kb on - strand, within ebgA at 217.983 kb on - strand, within ebgA at 217.984 kb on + strand, within ebgA at 218.009 kb on + strand, within ebgA at 218.116 kb on + strand, within ebgA at 218.116 kb on + strand, within ebgA at 218.145 kb on - strand, within ebgA at 218.288 kb on - strand, within ebgA at 218.336 kb on - strand, within ebgA at 218.346 kb on - strand, within ebgA at 218.398 kb on + strand, within ebgA at 218.399 kb on - strand, within ebgA at 218.585 kb on + strand, within ebgA at 218.732 kb on + strand, within ebgA at 218.732 kb on + strand, within ebgA at 218.960 kb on + strand, within ebgA at 218.960 kb on + strand, within ebgA at 218.961 kb on - strand, within ebgA at 219.081 kb on - strand at 219.115 kb on + strand at 219.299 kb on + strand at 219.347 kb on - strand at 219.372 kb on - strand at 219.544 kb on + strand, within ebgC at 219.559 kb on + strand, within ebgC at 219.563 kb on - strand, within ebgC at 219.589 kb on + strand, within ebgC at 219.615 kb on - strand, within ebgC at 219.842 kb on + strand at 219.863 kb on + strand at 219.882 kb on - strand at 220.121 kb on + strand, within ygjI at 220.122 kb on - strand, within ygjI at 220.124 kb on + strand, within ygjI at 220.221 kb on + strand, within ygjI at 220.221 kb on + strand, within ygjI at 220.226 kb on + strand, within ygjI at 220.227 kb on - strand, within ygjI at 220.319 kb on + strand, within ygjI at 220.319 kb on + strand, within ygjI
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 215,287 + ebgR BNILDI_01110 0.19 +0.6 215,288 - ebgR BNILDI_01110 0.20 +0.6 215,300 + ebgR BNILDI_01110 0.21 -1.7 215,300 + ebgR BNILDI_01110 0.21 +0.9 215,301 - ebgR BNILDI_01110 0.21 -0.3 215,307 - ebgR BNILDI_01110 0.21 +0.1 215,337 - ebgR BNILDI_01110 0.24 +0.6 215,451 + ebgR BNILDI_01110 0.36 +0.6 215,509 + ebgR BNILDI_01110 0.42 -0.3 215,547 - ebgR BNILDI_01110 0.46 -0.2 215,601 - ebgR BNILDI_01110 0.51 +1.2 215,632 + ebgR BNILDI_01110 0.54 -1.2 215,841 + ebgR BNILDI_01110 0.76 +1.5 216,209 - -0.0 216,217 + -0.6 216,218 - -0.2 216,321 - +0.3 216,332 + +0.4 216,462 + +1.1 216,481 + -0.2 216,532 + -0.0 216,533 - +0.8 216,675 - ebgA BNILDI_01115 0.13 -0.3 216,686 + ebgA BNILDI_01115 0.14 +0.8 216,686 + ebgA BNILDI_01115 0.14 -2.4 216,686 + ebgA BNILDI_01115 0.14 +1.5 216,686 + ebgA BNILDI_01115 0.14 -1.8 216,687 - ebgA BNILDI_01115 0.14 -0.6 216,701 + ebgA BNILDI_01115 0.14 +0.2 216,811 + ebgA BNILDI_01115 0.18 +0.0 216,811 + ebgA BNILDI_01115 0.18 -0.6 216,812 - ebgA BNILDI_01115 0.18 +0.8 216,812 - ebgA BNILDI_01115 0.18 -0.2 216,816 - ebgA BNILDI_01115 0.18 +0.3 216,832 + ebgA BNILDI_01115 0.18 -0.7 216,832 + ebgA BNILDI_01115 0.18 -0.1 216,832 + ebgA BNILDI_01115 0.18 -0.9 216,833 - ebgA BNILDI_01115 0.18 -0.0 216,896 - ebgA BNILDI_01115 0.20 +0.3 216,932 + ebgA BNILDI_01115 0.22 -0.2 216,933 - ebgA BNILDI_01115 0.22 -0.1 216,933 - ebgA BNILDI_01115 0.22 +0.3 217,008 - ebgA BNILDI_01115 0.24 -0.8 217,008 - ebgA BNILDI_01115 0.24 +0.7 217,010 - ebgA BNILDI_01115 0.24 -0.1 217,096 + ebgA BNILDI_01115 0.27 -0.9 217,136 + ebgA BNILDI_01115 0.28 +1.0 217,219 + ebgA BNILDI_01115 0.31 -0.6 217,260 - ebgA BNILDI_01115 0.32 +1.5 217,367 - ebgA BNILDI_01115 0.36 +0.3 217,367 - ebgA BNILDI_01115 0.36 -2.0 217,367 - ebgA BNILDI_01115 0.36 -0.3 217,480 + ebgA BNILDI_01115 0.39 +1.2 217,641 - ebgA BNILDI_01115 0.45 +0.4 217,641 - ebgA BNILDI_01115 0.45 +0.3 217,800 - ebgA BNILDI_01115 0.50 -0.5 217,800 - ebgA BNILDI_01115 0.50 +0.6 217,856 + ebgA BNILDI_01115 0.52 -0.8 217,858 + ebgA BNILDI_01115 0.52 -0.4 217,871 - ebgA BNILDI_01115 0.52 +0.3 217,982 + ebgA BNILDI_01115 0.56 +0.8 217,982 + ebgA BNILDI_01115 0.56 +2.2 217,982 + ebgA BNILDI_01115 0.56 +1.6 217,982 + ebgA BNILDI_01115 0.56 +0.5 217,983 - ebgA BNILDI_01115 0.56 +1.0 217,983 - ebgA BNILDI_01115 0.56 +1.9 217,984 + ebgA BNILDI_01115 0.56 +0.5 218,009 + ebgA BNILDI_01115 0.56 -0.3 218,116 + ebgA BNILDI_01115 0.60 +0.4 218,116 + ebgA BNILDI_01115 0.60 +0.2 218,145 - ebgA BNILDI_01115 0.61 -0.4 218,288 - ebgA BNILDI_01115 0.65 +0.4 218,336 - ebgA BNILDI_01115 0.67 -1.2 218,346 - ebgA BNILDI_01115 0.67 +0.6 218,398 + ebgA BNILDI_01115 0.69 -0.3 218,399 - ebgA BNILDI_01115 0.69 +1.6 218,585 + ebgA BNILDI_01115 0.75 +2.7 218,732 + ebgA BNILDI_01115 0.80 +0.9 218,732 + ebgA BNILDI_01115 0.80 +0.1 218,960 + ebgA BNILDI_01115 0.87 -1.8 218,960 + ebgA BNILDI_01115 0.87 +0.1 218,961 - ebgA BNILDI_01115 0.87 +0.6 219,081 - +0.4 219,115 + -0.6 219,299 + -0.6 219,347 - -0.9 219,372 - +0.1 219,544 + ebgC BNILDI_01120 0.43 +0.2 219,559 + ebgC BNILDI_01120 0.46 +2.3 219,563 - ebgC BNILDI_01120 0.47 +0.0 219,589 + ebgC BNILDI_01120 0.53 -1.4 219,615 - ebgC BNILDI_01120 0.58 -0.4 219,842 + +2.8 219,863 + +1.0 219,882 - -0.2 220,121 + ygjI BNILDI_01125 0.18 -0.3 220,122 - ygjI BNILDI_01125 0.18 -0.3 220,124 + ygjI BNILDI_01125 0.18 +0.5 220,221 + ygjI BNILDI_01125 0.25 +0.9 220,221 + ygjI BNILDI_01125 0.25 -1.5 220,226 + ygjI BNILDI_01125 0.25 +0.5 220,227 - ygjI BNILDI_01125 0.25 -0.3 220,319 + ygjI BNILDI_01125 0.32 +0.7 220,319 + ygjI BNILDI_01125 0.32 -0.4
Or see this region's nucleotide sequence