Strain Fitness in Escherichia coli ECRC62 around BNILDI_00910

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttolC and ygiB are separated by 147 nucleotidesygiB and ygiC are separated by 5 nucleotides BNILDI_00905: tolC - outer membrane channel protein TolC, at 173,115 to 174,596 tolC BNILDI_00910: ygiB - DUF1190 domain-containing protein, at 174,744 to 175,415 ygiB BNILDI_00915: ygiC - Putative acid--amine ligase YgiC, at 175,421 to 176,581 ygiC Position (kb) 174 175 176Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 173.745 kb on + strand, within tolCat 173.745 kb on + strand, within tolCat 173.746 kb on - strand, within tolCat 173.851 kb on + strand, within tolCat 173.914 kb on + strand, within tolCat 173.915 kb on - strand, within tolCat 173.961 kb on + strand, within tolCat 173.963 kb on + strand, within tolCat 174.015 kb on - strand, within tolCat 174.099 kb on + strand, within tolCat 174.100 kb on - strand, within tolCat 174.182 kb on + strand, within tolCat 174.191 kb on + strand, within tolCat 174.192 kb on - strand, within tolCat 174.203 kb on + strand, within tolCat 174.396 kb on - strand, within tolCat 174.497 kb on + strandat 174.510 kb on + strandat 174.578 kb on + strandat 174.640 kb on + strandat 174.716 kb on + strandat 174.716 kb on + strandat 174.720 kb on + strandat 174.721 kb on - strandat 174.721 kb on - strandat 174.936 kb on - strand, within ygiBat 175.128 kb on + strand, within ygiBat 175.217 kb on + strand, within ygiBat 175.221 kb on + strand, within ygiBat 175.222 kb on - strand, within ygiBat 175.367 kb on + strandat 175.435 kb on + strandat 175.435 kb on + strandat 175.499 kb on + strandat 175.529 kb on + strandat 175.530 kb on - strandat 175.533 kb on - strandat 175.793 kb on + strand, within ygiCat 175.793 kb on + strand, within ygiCat 175.794 kb on - strand, within ygiCat 175.926 kb on - strand, within ygiCat 175.991 kb on + strand, within ygiCat 176.058 kb on + strand, within ygiCat 176.059 kb on - strand, within ygiCat 176.179 kb on - strand, within ygiCat 176.279 kb on + strand, within ygiC

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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173,745 + tolC BNILDI_00905 0.43 -0.9
173,745 + tolC BNILDI_00905 0.43 +0.3
173,746 - tolC BNILDI_00905 0.43 -0.8
173,851 + tolC BNILDI_00905 0.50 -0.9
173,914 + tolC BNILDI_00905 0.54 -0.8
173,915 - tolC BNILDI_00905 0.54 -0.4
173,961 + tolC BNILDI_00905 0.57 +0.1
173,963 + tolC BNILDI_00905 0.57 -0.7
174,015 - tolC BNILDI_00905 0.61 -0.3
174,099 + tolC BNILDI_00905 0.66 -2.5
174,100 - tolC BNILDI_00905 0.66 +1.4
174,182 + tolC BNILDI_00905 0.72 -0.1
174,191 + tolC BNILDI_00905 0.73 -0.5
174,192 - tolC BNILDI_00905 0.73 -0.6
174,203 + tolC BNILDI_00905 0.73 -0.1
174,396 - tolC BNILDI_00905 0.86 +0.0
174,497 + +0.2
174,510 + +0.5
174,578 + -2.3
174,640 + +0.7
174,716 + -0.7
174,716 + -1.2
174,720 + +0.3
174,721 - -0.6
174,721 - -0.1
174,936 - ygiB BNILDI_00910 0.29 -4.4
175,128 + ygiB BNILDI_00910 0.57 -1.8
175,217 + ygiB BNILDI_00910 0.70 -0.6
175,221 + ygiB BNILDI_00910 0.71 -0.1
175,222 - ygiB BNILDI_00910 0.71 +0.1
175,367 + +0.3
175,435 + +0.3
175,435 + +0.4
175,499 + -0.2
175,529 + -0.2
175,530 - +0.1
175,533 - -0.2
175,793 + ygiC BNILDI_00915 0.32 -0.1
175,793 + ygiC BNILDI_00915 0.32 +0.1
175,794 - ygiC BNILDI_00915 0.32 -0.3
175,926 - ygiC BNILDI_00915 0.43 -0.4
175,991 + ygiC BNILDI_00915 0.49 +1.3
176,058 + ygiC BNILDI_00915 0.55 -0.4
176,059 - ygiC BNILDI_00915 0.55 -0.9
176,179 - ygiC BNILDI_00915 0.65 +0.3
176,279 + ygiC BNILDI_00915 0.74 +0.3

Or see this region's nucleotide sequence