Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt paoA and paoB overlap by 4 nucleotides paoB and paoC overlap by 4 nucleotides paoC and paoD are separated by 9 nucleotides paoD and yagP overlap by 22 nucleotides
BNILDI_00135: paoA - aldehyde dehydrogenase iron-sulfur subunit, at 35,079 to 35,768
paoA
BNILDI_00140: paoB - aldehyde oxidoreductase FAD-binding subunit PaoB, at 35,765 to 36,721
paoB
BNILDI_00145: paoC - aldehyde oxidoreductase molybdenum-binding subunit PaoC, at 36,718 to 38,916
paoC
BNILDI_00150: paoD - molybdenum cofactor insertion chaperone PaoD, at 38,926 to 39,882
paoD
BNILDI_00155: yagP - Putative LysR family substrate binding domain-containing protein YagP, at 39,861 to 40,271
yagP
Position (kb) 36
37
38
39 Strain fitness (log2 ratio) -2
-1
0
1
2 at 35.720 kb on + strand at 35.759 kb on - strand at 35.780 kb on + strand at 35.780 kb on + strand at 35.936 kb on - strand, within paoB at 36.072 kb on + strand, within paoB at 36.077 kb on - strand, within paoB at 36.077 kb on - strand, within paoB at 36.154 kb on + strand, within paoB at 36.216 kb on + strand, within paoB at 36.222 kb on + strand, within paoB at 36.222 kb on + strand, within paoB at 36.401 kb on - strand, within paoB at 36.418 kb on - strand, within paoB at 36.442 kb on + strand, within paoB at 36.442 kb on + strand, within paoB at 36.443 kb on - strand, within paoB at 36.447 kb on - strand, within paoB at 36.452 kb on - strand, within paoB at 36.547 kb on - strand, within paoB at 36.553 kb on + strand, within paoB at 36.553 kb on + strand, within paoB at 36.554 kb on - strand, within paoB at 36.554 kb on - strand, within paoB at 36.589 kb on - strand, within paoB at 36.609 kb on + strand, within paoB at 36.610 kb on - strand, within paoB at 36.611 kb on + strand, within paoB at 36.611 kb on + strand, within paoB at 36.612 kb on - strand, within paoB at 36.659 kb on - strand at 36.865 kb on + strand at 36.866 kb on - strand at 36.871 kb on + strand at 36.871 kb on + strand at 36.872 kb on - strand at 37.125 kb on + strand, within paoC at 37.138 kb on + strand, within paoC at 37.138 kb on + strand, within paoC at 37.252 kb on - strand, within paoC at 37.256 kb on - strand, within paoC at 37.256 kb on - strand, within paoC at 37.256 kb on - strand, within paoC at 37.278 kb on + strand, within paoC at 37.413 kb on + strand, within paoC at 37.413 kb on + strand, within paoC at 37.414 kb on - strand, within paoC at 37.416 kb on + strand, within paoC at 37.427 kb on - strand, within paoC at 37.621 kb on - strand, within paoC at 38.040 kb on + strand, within paoC at 38.041 kb on - strand, within paoC at 38.100 kb on - strand, within paoC at 38.275 kb on + strand, within paoC at 38.287 kb on - strand, within paoC at 38.387 kb on + strand, within paoC at 38.387 kb on + strand, within paoC at 38.535 kb on + strand, within paoC at 38.836 kb on + strand at 38.836 kb on + strand at 38.836 kb on + strand at 38.836 kb on + strand at 38.836 kb on + strand at 38.837 kb on - strand at 38.839 kb on - strand at 38.895 kb on + strand at 38.964 kb on + strand at 38.964 kb on + strand at 39.526 kb on + strand, within paoD at 39.526 kb on + strand, within paoD at 39.527 kb on - strand, within paoD at 39.538 kb on - strand, within paoD at 39.664 kb on + strand, within paoD at 39.702 kb on - strand, within paoD at 39.798 kb on + strand at 39.836 kb on + strand at 39.836 kb on + strand at 39.837 kb on - strand at 39.837 kb on - strand at 39.837 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 35,720 + -0.4 35,759 - -0.7 35,780 + -0.2 35,780 + +0.1 35,936 - paoB BNILDI_00140 0.18 -0.3 36,072 + paoB BNILDI_00140 0.32 +2.1 36,077 - paoB BNILDI_00140 0.33 -0.2 36,077 - paoB BNILDI_00140 0.33 -0.0 36,154 + paoB BNILDI_00140 0.41 -0.1 36,216 + paoB BNILDI_00140 0.47 +1.7 36,222 + paoB BNILDI_00140 0.48 +0.4 36,222 + paoB BNILDI_00140 0.48 -0.1 36,401 - paoB BNILDI_00140 0.66 +0.7 36,418 - paoB BNILDI_00140 0.68 +0.1 36,442 + paoB BNILDI_00140 0.71 +0.0 36,442 + paoB BNILDI_00140 0.71 -1.5 36,443 - paoB BNILDI_00140 0.71 +1.0 36,447 - paoB BNILDI_00140 0.71 +1.3 36,452 - paoB BNILDI_00140 0.72 +0.2 36,547 - paoB BNILDI_00140 0.82 +0.5 36,553 + paoB BNILDI_00140 0.82 -0.7 36,553 + paoB BNILDI_00140 0.82 +0.1 36,554 - paoB BNILDI_00140 0.82 +2.3 36,554 - paoB BNILDI_00140 0.82 +0.5 36,589 - paoB BNILDI_00140 0.86 -1.1 36,609 + paoB BNILDI_00140 0.88 -0.8 36,610 - paoB BNILDI_00140 0.88 -2.0 36,611 + paoB BNILDI_00140 0.88 -0.4 36,611 + paoB BNILDI_00140 0.88 -0.2 36,612 - paoB BNILDI_00140 0.89 -0.1 36,659 - -0.4 36,865 + -1.2 36,866 - +0.2 36,871 + -0.3 36,871 + -0.0 36,872 - +0.1 37,125 + paoC BNILDI_00145 0.19 +0.5 37,138 + paoC BNILDI_00145 0.19 +0.0 37,138 + paoC BNILDI_00145 0.19 +0.5 37,252 - paoC BNILDI_00145 0.24 -0.3 37,256 - paoC BNILDI_00145 0.24 -0.5 37,256 - paoC BNILDI_00145 0.24 +0.7 37,256 - paoC BNILDI_00145 0.24 -0.3 37,278 + paoC BNILDI_00145 0.25 -0.3 37,413 + paoC BNILDI_00145 0.32 +0.1 37,413 + paoC BNILDI_00145 0.32 -0.8 37,414 - paoC BNILDI_00145 0.32 -0.0 37,416 + paoC BNILDI_00145 0.32 +0.8 37,427 - paoC BNILDI_00145 0.32 +0.3 37,621 - paoC BNILDI_00145 0.41 +0.0 38,040 + paoC BNILDI_00145 0.60 -0.4 38,041 - paoC BNILDI_00145 0.60 +0.7 38,100 - paoC BNILDI_00145 0.63 +0.3 38,275 + paoC BNILDI_00145 0.71 +0.2 38,287 - paoC BNILDI_00145 0.71 +0.2 38,387 + paoC BNILDI_00145 0.76 +0.2 38,387 + paoC BNILDI_00145 0.76 -0.5 38,535 + paoC BNILDI_00145 0.83 +0.0 38,836 + +0.5 38,836 + -0.2 38,836 + -0.0 38,836 + +0.1 38,836 + -1.3 38,837 - -1.8 38,839 - -2.3 38,895 + -0.0 38,964 + -0.1 38,964 + +0.1 39,526 + paoD BNILDI_00150 0.63 -0.2 39,526 + paoD BNILDI_00150 0.63 -0.4 39,527 - paoD BNILDI_00150 0.63 +0.9 39,538 - paoD BNILDI_00150 0.64 -0.0 39,664 + paoD BNILDI_00150 0.77 +0.2 39,702 - paoD BNILDI_00150 0.81 -0.3 39,798 + +2.1 39,836 + +0.0 39,836 + +1.5 39,837 - +0.3 39,837 - +1.1 39,837 - +1.4
Or see this region's nucleotide sequence