Strain Fitness in Escherichia coli ECOR38 around HEPCGN_22095

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
3,174,450	-	nuoI	HEPCGN_22080	0.82	-0.5
3,174,470	+	nuoI	HEPCGN_22080	0.85	-3.8
3,174,471	-	nuoI	HEPCGN_22080	0.86	-2.8
3,174,471	-	nuoI	HEPCGN_22080	0.86	-3.7
3,174,492	-	nuoI	HEPCGN_22080	0.90	-1.3
3,174,575	+				-3.6
3,174,576	-				-1.1
3,174,577	+				-3.1
3,174,597	+				-2.3
3,174,598	-				-2.2
3,174,598	-				-0.0
3,174,705	-	nuoJ	HEPCGN_22085	0.26	-3.9
3,174,748	+	nuoJ	HEPCGN_22085	0.34	-1.2
3,174,938	-	nuoJ	HEPCGN_22085	0.68	-2.0
3,174,952	+	nuoJ	HEPCGN_22085	0.71	-1.2
3,174,953	-	nuoJ	HEPCGN_22085	0.71	-0.9
3,174,969	-	nuoJ	HEPCGN_22085	0.74	-2.1
3,174,973	-	nuoJ	HEPCGN_22085	0.74	+0.4
3,174,994	+	nuoJ	HEPCGN_22085	0.78	-1.6
3,174,994	+	nuoJ	HEPCGN_22085	0.78	-0.8
3,175,151	+	nuoK	HEPCGN_22090	0.13	-1.3
3,175,264	+	nuoK	HEPCGN_22090	0.50	-1.6
3,175,295	-	nuoK	HEPCGN_22090	0.61	-2.8
3,175,394	+				-0.8
3,175,434	-				+1.4
3,175,522	+				-1.7
3,175,540	+				-2.5
3,175,670	+	nuoL	HEPCGN_22095	0.14	-0.2
3,175,713	+	nuoL	HEPCGN_22095	0.16	-1.7
3,175,713	+	nuoL	HEPCGN_22095	0.16	-3.2
3,175,713	+	nuoL	HEPCGN_22095	0.16	-2.6
3,175,714	-	nuoL	HEPCGN_22095	0.17	-1.8
3,175,714	-	nuoL	HEPCGN_22095	0.17	-0.0
3,175,714	-	nuoL	HEPCGN_22095	0.17	-3.5
3,175,725	+	nuoL	HEPCGN_22095	0.17	-2.5
3,175,860	+	nuoL	HEPCGN_22095	0.24	-2.6
3,175,878	+	nuoL	HEPCGN_22095	0.25	+2.0
3,176,309	-	nuoL	HEPCGN_22095	0.49	-1.9
3,176,309	-	nuoL	HEPCGN_22095	0.49	-2.4
3,176,338	-	nuoL	HEPCGN_22095	0.50	-1.2
3,176,342	+	nuoL	HEPCGN_22095	0.51	-3.0
3,176,342	+	nuoL	HEPCGN_22095	0.51	-2.7
3,176,361	+	nuoL	HEPCGN_22095	0.52	-1.8
3,176,433	-	nuoL	HEPCGN_22095	0.56	-1.5
3,176,535	+	nuoL	HEPCGN_22095	0.61	-2.3
3,176,643	-	nuoL	HEPCGN_22095	0.67	-1.0
3,176,702	+	nuoL	HEPCGN_22095	0.70	-1.5
3,176,894	+	nuoL	HEPCGN_22095	0.81	-1.7
3,176,958	-	nuoL	HEPCGN_22095	0.84	-4.3
3,177,015	+	nuoL	HEPCGN_22095	0.87	-1.2
3,177,189	+				+0.1
3,177,190	-				-2.8
3,177,281	+				-1.5
3,177,281	+				-1.3
3,177,282	-				-4.3
3,177,282	-				-3.6
3,177,283	+				-1.5
3,177,283	+				-0.9
3,177,283	+				+0.3
3,177,283	+				-1.3
3,177,284	-				-1.3
3,177,284	-				-3.1
3,177,284	-				-1.5
3,177,284	-				-2.8
3,177,284	-				-2.2
3,177,291	+				-2.3
3,177,292	-				-0.1
3,177,292	-				+0.7
3,177,328	+				-2.5
3,177,329	-				-2.2
3,177,329	-				-2.4
3,177,397	+				+0.1
3,177,406	+				-1.0
3,177,422	-				-1.1
3,177,424	+				-0.0
3,177,437	-				-1.3
3,177,437	-				-0.8
3,177,437	-				-4.0
3,177,651	-	nuoM	HEPCGN_22100	0.15	-4.0
3,178,005	+	nuoM	HEPCGN_22100	0.38	-3.1
3,178,035	+	nuoM	HEPCGN_22100	0.40	-3.7
3,178,036	-	nuoM	HEPCGN_22100	0.40	-2.0
3,178,053	-	nuoM	HEPCGN_22100	0.42	-2.5
3,178,222	-	nuoM	HEPCGN_22100	0.53	-2.5