Strain Fitness in Escherichia coli ECOR38 around HEPCGN_19955

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
2,739,713	+	yqaB	HEPCGN_19945	0.16	-0.2
2,739,736	+	yqaB	HEPCGN_19945	0.20	+0.1
2,739,783	+	yqaB	HEPCGN_19945	0.28	+1.1
2,739,783	+	yqaB	HEPCGN_19945	0.28	+0.0
2,739,784	-	yqaB	HEPCGN_19945	0.28	+0.1
2,739,867	+	yqaB	HEPCGN_19945	0.43	-0.2
2,739,867	+	yqaB	HEPCGN_19945	0.43	+0.0
2,739,867	+	yqaB	HEPCGN_19945	0.43	-1.1
2,739,867	+	yqaB	HEPCGN_19945	0.43	+0.2
2,739,868	-	yqaB	HEPCGN_19945	0.43	+0.3
2,739,868	-	yqaB	HEPCGN_19945	0.43	-0.2
2,739,868	-	yqaB	HEPCGN_19945	0.43	+0.5
2,740,241	+	yqaA	HEPCGN_19950	0.12	+0.9
2,740,246	+	yqaA	HEPCGN_19950	0.14	-1.1
2,740,246	+	yqaA	HEPCGN_19950	0.14	-0.2
2,740,322	-	yqaA	HEPCGN_19950	0.31	-0.6
2,740,354	+	yqaA	HEPCGN_19950	0.39	-0.8
2,740,358	+	yqaA	HEPCGN_19950	0.40	+0.4
2,740,359	-	yqaA	HEPCGN_19950	0.40	-0.0
2,740,391	+	yqaA	HEPCGN_19950	0.47	+0.0
2,740,392	-	yqaA	HEPCGN_19950	0.48	+2.0
2,740,437	+	yqaA	HEPCGN_19950	0.58	-0.1
2,740,453	+	yqaA	HEPCGN_19950	0.62	-0.7
2,740,454	-	yqaA	HEPCGN_19950	0.62	+0.2
2,740,454	-	yqaA	HEPCGN_19950	0.62	-0.3
2,740,454	-	yqaA	HEPCGN_19950	0.62	-0.2
2,740,486	+	yqaA	HEPCGN_19950	0.69	-0.0
2,740,487	-	yqaA	HEPCGN_19950	0.70	+0.3
2,740,499	-	yqaA	HEPCGN_19950	0.72	+0.2
2,740,553	+	yqaA	HEPCGN_19950	0.85	+0.7
2,740,562	-	yqaA	HEPCGN_19950	0.87	+1.2
2,740,566	+	yqaA	HEPCGN_19950	0.88	-0.2
2,740,615	-				-0.1
2,740,632	+				-0.2
2,740,632	+				-0.4
2,740,632	+				+0.0
2,740,645	-				+0.0
2,740,650	+				+0.0
2,740,702	+				-0.4
2,740,702	+				-0.8
2,740,703	-				+0.7
2,740,788	-				+0.7
2,740,896	-	gshA	HEPCGN_19955	0.13	-1.5
2,740,923	-	gshA	HEPCGN_19955	0.15	-1.2
2,740,923	-	gshA	HEPCGN_19955	0.15	-0.7
2,740,954	-	gshA	HEPCGN_19955	0.17	-0.4
2,740,997	+	gshA	HEPCGN_19955	0.20	-0.6
2,741,007	+	gshA	HEPCGN_19955	0.20	+0.9
2,741,007	+	gshA	HEPCGN_19955	0.20	-1.1
2,741,007	+	gshA	HEPCGN_19955	0.20	+0.2
2,741,007	+	gshA	HEPCGN_19955	0.20	-0.8
2,741,007	+	gshA	HEPCGN_19955	0.20	-0.4
2,741,008	-	gshA	HEPCGN_19955	0.20	-1.7
2,741,008	-	gshA	HEPCGN_19955	0.20	-1.8
2,741,008	-	gshA	HEPCGN_19955	0.20	-0.1
2,741,044	-	gshA	HEPCGN_19955	0.23	+0.6
2,741,247	+	gshA	HEPCGN_19955	0.36	-2.9
2,741,248	-	gshA	HEPCGN_19955	0.36	-0.8
2,741,250	+	gshA	HEPCGN_19955	0.36	-1.2
2,741,251	-	gshA	HEPCGN_19955	0.36	+0.6
2,741,360	+	gshA	HEPCGN_19955	0.43	-1.3
2,741,364	+	gshA	HEPCGN_19955	0.43	-1.2
2,741,364	+	gshA	HEPCGN_19955	0.43	-1.0
2,741,364	+	gshA	HEPCGN_19955	0.43	-2.3
2,741,365	-	gshA	HEPCGN_19955	0.43	-3.0
2,741,365	-	gshA	HEPCGN_19955	0.43	+0.8
2,741,365	-	gshA	HEPCGN_19955	0.43	+0.7
2,741,368	-	gshA	HEPCGN_19955	0.44	-2.1
2,741,411	+	gshA	HEPCGN_19955	0.46	-1.9
2,741,463	+	gshA	HEPCGN_19955	0.50	-1.4
2,741,463	+	gshA	HEPCGN_19955	0.50	-1.4
2,741,467	+	gshA	HEPCGN_19955	0.50	-0.4
2,741,537	+	gshA	HEPCGN_19955	0.54	+0.2
2,741,538	-	gshA	HEPCGN_19955	0.55	-0.1
2,741,587	-	gshA	HEPCGN_19955	0.58	-0.3
2,741,647	+	gshA	HEPCGN_19955	0.62	-0.8
2,741,664	+	gshA	HEPCGN_19955	0.63	-0.5
2,741,666	+	gshA	HEPCGN_19955	0.63	+1.1
2,741,667	-	gshA	HEPCGN_19955	0.63	+0.6
2,741,667	-	gshA	HEPCGN_19955	0.63	-2.2
2,741,667	-	gshA	HEPCGN_19955	0.63	-1.4
2,741,804	+	gshA	HEPCGN_19955	0.72	-1.1
2,741,805	-	gshA	HEPCGN_19955	0.72	-0.8
2,741,951	+	gshA	HEPCGN_19955	0.81	-1.1
2,741,952	-	gshA	HEPCGN_19955	0.81	+0.6
2,742,043	+	gshA	HEPCGN_19955	0.87	-0.2
2,742,050	+	gshA	HEPCGN_19955	0.87	-0.2
2,742,100	-				+0.6
2,742,331	-				-0.8
2,742,393	-				+0.5
2,742,405	+				+0.2
2,742,405	+				-0.1
2,742,405	+				+0.6
2,742,405	+				-0.0
2,742,406	-				-1.0
2,742,625	+	luxS	HEPCGN_19965	0.45	+0.9
2,742,657	-	luxS	HEPCGN_19965	0.51	+0.1
2,742,657	-	luxS	HEPCGN_19965	0.51	+0.9
2,742,786	-	luxS	HEPCGN_19965	0.76	-0.6
2,742,908	+				-0.2
2,742,908	+				+0.5
2,742,908	+				+0.0
2,742,921	-				+0.5
2,742,933	-				+0.1
2,742,975	+				-0.1
2,742,976	-				-0.1
2,743,171	+	emrB	HEPCGN_19970	0.13	+0.9
2,743,171	+	emrB	HEPCGN_19970	0.13	-0.3
2,743,172	-	emrB	HEPCGN_19970	0.13	-0.1
2,743,173	+	emrB	HEPCGN_19970	0.13	-0.1
2,743,173	+	emrB	HEPCGN_19970	0.13	-0.2
2,743,174	-	emrB	HEPCGN_19970	0.13	-0.0
2,743,174	-	emrB	HEPCGN_19970	0.13	-0.1
2,743,174	-	emrB	HEPCGN_19970	0.13	-0.3