Strain Fitness in Escherichia coli ECOR38 around HEPCGN_12650

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
1,278,099	+	yihY	HEPCGN_12640	0.69	+0.5
1,278,121	+	yihY	HEPCGN_12640	0.72	+0.7
1,278,121	+	yihY	HEPCGN_12640	0.72	+0.1
1,278,246	+	yihY	HEPCGN_12640	0.86	+0.2
1,278,246	+	yihY	HEPCGN_12640	0.86	-0.1
1,278,246	+	yihY	HEPCGN_12640	0.86	-1.1
1,278,247	-	yihY	HEPCGN_12640	0.86	+0.6
1,278,256	+	yihY	HEPCGN_12640	0.87	+0.3
1,278,256	+	yihY	HEPCGN_12640	0.87	+0.4
1,278,257	-	yihY	HEPCGN_12640	0.87	-0.2
1,278,303	-				+0.3
1,278,362	+				+0.9
1,278,367	+				+0.6
1,278,368	-				+0.1
1,278,403	-				+0.3
1,278,423	+	yihX	HEPCGN_12645	0.10	-0.5
1,278,424	-	yihX	HEPCGN_12645	0.10	-2.7
1,278,448	+	yihX	HEPCGN_12645	0.14	-0.6
1,278,448	+	yihX	HEPCGN_12645	0.14	+0.1
1,278,448	+	yihX	HEPCGN_12645	0.14	-0.7
1,278,448	+	yihX	HEPCGN_12645	0.14	+0.7
1,278,448	+	yihX	HEPCGN_12645	0.14	+0.1
1,278,449	-	yihX	HEPCGN_12645	0.15	+0.2
1,278,449	-	yihX	HEPCGN_12645	0.15	-0.7
1,278,449	-	yihX	HEPCGN_12645	0.15	+0.2
1,278,449	-	yihX	HEPCGN_12645	0.15	-0.7
1,278,449	-	yihX	HEPCGN_12645	0.15	+0.5
1,278,449	-	yihX	HEPCGN_12645	0.15	-0.2
1,278,449	-	yihX	HEPCGN_12645	0.15	+0.4
1,278,451	-	yihX	HEPCGN_12645	0.15	-0.1
1,278,566	+	yihX	HEPCGN_12645	0.34	-0.2
1,278,566	+	yihX	HEPCGN_12645	0.34	-0.3
1,278,566	+	yihX	HEPCGN_12645	0.34	+0.3
1,278,567	-	yihX	HEPCGN_12645	0.34	-0.1
1,278,567	-	yihX	HEPCGN_12645	0.34	+0.2
1,278,570	+	yihX	HEPCGN_12645	0.35	+0.0
1,278,571	-	yihX	HEPCGN_12645	0.35	+0.0
1,278,571	-	yihX	HEPCGN_12645	0.35	-1.3
1,278,618	+	yihX	HEPCGN_12645	0.43	-0.5
1,278,618	+	yihX	HEPCGN_12645	0.43	+0.8
1,278,618	+	yihX	HEPCGN_12645	0.43	-0.2
1,278,619	-	yihX	HEPCGN_12645	0.43	-1.3
1,278,619	-	yihX	HEPCGN_12645	0.43	-0.4
1,278,621	+	yihX	HEPCGN_12645	0.43	+1.1
1,278,621	+	yihX	HEPCGN_12645	0.43	+0.1
1,278,621	+	yihX	HEPCGN_12645	0.43	+0.0
1,278,622	-	yihX	HEPCGN_12645	0.43	+0.7
1,278,622	-	yihX	HEPCGN_12645	0.43	+0.2
1,278,622	-	yihX	HEPCGN_12645	0.43	-0.1
1,278,749	+	yihX	HEPCGN_12645	0.65	+0.1
1,278,749	+	yihX	HEPCGN_12645	0.65	+0.3
1,278,750	-	yihX	HEPCGN_12645	0.65	+1.0
1,278,859	-	yihX	HEPCGN_12645	0.83	-0.3
1,278,941	-				+0.2
1,278,951	+				+0.2
1,278,951	+				-0.8
1,278,951	+				-1.7
1,278,952	-				+0.9
1,278,953	+				+0.6
1,279,019	-				+1.3
1,279,105	-				+0.7
1,279,169	+	csqR	HEPCGN_12650	0.14	-0.0
1,279,198	+	csqR	HEPCGN_12650	0.18	-0.3
1,279,202	+	csqR	HEPCGN_12650	0.18	-0.8
1,279,202	+	csqR	HEPCGN_12650	0.18	-1.7
1,279,202	+	csqR	HEPCGN_12650	0.18	-0.9
1,279,202	+	csqR	HEPCGN_12650	0.18	-0.2
1,279,203	-	csqR	HEPCGN_12650	0.18	-1.3
1,279,226	+	csqR	HEPCGN_12650	0.21	-0.5
1,279,227	-	csqR	HEPCGN_12650	0.21	-0.6
1,279,227	-	csqR	HEPCGN_12650	0.21	-0.0
1,279,262	+	csqR	HEPCGN_12650	0.26	+0.2
1,279,272	-	csqR	HEPCGN_12650	0.27	-1.0
1,279,331	-	csqR	HEPCGN_12650	0.35	-1.2
1,279,388	+	csqR	HEPCGN_12650	0.42	-0.4
1,279,442	-	csqR	HEPCGN_12650	0.49	-0.5
1,279,449	-	csqR	HEPCGN_12650	0.50	-2.8
1,279,496	+	csqR	HEPCGN_12650	0.56	-2.0
1,279,497	-	csqR	HEPCGN_12650	0.56	-1.0
1,279,529	+	csqR	HEPCGN_12650	0.60	-1.8
1,279,545	+	csqR	HEPCGN_12650	0.62	-0.7
1,279,545	+	csqR	HEPCGN_12650	0.62	-0.0
1,279,566	-	csqR	HEPCGN_12650	0.65	+1.4
1,279,568	-	csqR	HEPCGN_12650	0.65	-0.2
1,279,568	-	csqR	HEPCGN_12650	0.65	-1.0
1,279,683	-	csqR	HEPCGN_12650	0.79	-0.9
1,279,766	+				-0.9
1,279,766	+				-0.8
1,279,767	-				+0.5
1,279,773	-				+1.1
1,279,775	-				+0.5
1,279,827	+				-0.7
1,280,060	+	yihV	HEPCGN_12655	0.20	-0.5
1,280,064	+	yihV	HEPCGN_12655	0.21	+0.0
1,280,065	-	yihV	HEPCGN_12655	0.21	-0.1
1,280,346	-	yihV	HEPCGN_12655	0.52	-0.1
1,280,364	+	yihV	HEPCGN_12655	0.54	-0.3
1,280,364	+	yihV	HEPCGN_12655	0.54	-0.5
1,280,364	+	yihV	HEPCGN_12655	0.54	-0.3
1,280,513	+	yihV	HEPCGN_12655	0.71	+0.4
1,280,514	-	yihV	HEPCGN_12655	0.71	+0.4
1,280,526	-	yihV	HEPCGN_12655	0.72	-0.0
1,280,693	-				-0.3
1,280,697	-				+0.6
1,280,726	-				-1.4
1,280,726	-				+0.3
1,280,728	+				+0.4
1,280,728	+				-0.7
1,280,729	-				-0.1
1,280,748	-				-0.2