Strain Fitness in Escherichia coli ECOR38 around HEPCGN_10695

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_10690 and HEPCGN_10695 are separated by 361 nucleotidesHEPCGN_10695 and HEPCGN_10700 are separated by 336 nucleotides HEPCGN_10690: HEPCGN_10690 - integrase, at 876,835 to 878,097 _10690 HEPCGN_10695: HEPCGN_10695 - peptide ABC transporter substrate-binding protein, at 878,459 to 878,623 _10695 HEPCGN_10700: HEPCGN_10700 - lactate permease, at 878,960 to 880,516 _10700 Position (kb) 878 879Strain fitness (log2 ratio) -3 -2 -1 0 1at 877.533 kb on - strand, within HEPCGN_10690at 877.725 kb on - strand, within HEPCGN_10690at 877.779 kb on + strand, within HEPCGN_10690at 877.802 kb on + strand, within HEPCGN_10690at 877.955 kb on + strand, within HEPCGN_10690at 877.966 kb on + strand, within HEPCGN_10690at 877.974 kb on + strandat 877.975 kb on - strandat 878.010 kb on - strandat 878.053 kb on - strandat 878.297 kb on + strandat 878.400 kb on + strandat 878.454 kb on + strandat 878.454 kb on + strandat 878.499 kb on - strand, within HEPCGN_10695at 878.516 kb on + strand, within HEPCGN_10695at 878.516 kb on + strand, within HEPCGN_10695at 878.519 kb on + strand, within HEPCGN_10695at 878.519 kb on + strand, within HEPCGN_10695at 878.569 kb on + strand, within HEPCGN_10695at 878.592 kb on - strand, within HEPCGN_10695at 878.597 kb on + strand, within HEPCGN_10695at 878.597 kb on + strand, within HEPCGN_10695at 878.602 kb on + strand, within HEPCGN_10695at 878.602 kb on + strand, within HEPCGN_10695at 878.615 kb on - strandat 878.697 kb on + strandat 878.878 kb on - strandat 878.993 kb on - strandat 878.993 kb on - strandat 879.047 kb on + strandat 879.047 kb on + strandat 879.047 kb on + strandat 879.047 kb on + strandat 879.048 kb on - strandat 879.048 kb on - strandat 879.058 kb on + strandat 879.058 kb on + strandat 879.078 kb on + strandat 879.079 kb on - strandat 879.112 kb on + strandat 879.112 kb on + strandat 879.113 kb on - strandat 879.135 kb on + strand, within HEPCGN_10700at 879.191 kb on + strand, within HEPCGN_10700at 879.191 kb on + strand, within HEPCGN_10700at 879.191 kb on + strand, within HEPCGN_10700at 879.192 kb on - strand, within HEPCGN_10700at 879.192 kb on - strand, within HEPCGN_10700at 879.192 kb on - strand, within HEPCGN_10700at 879.198 kb on - strand, within HEPCGN_10700at 879.266 kb on - strand, within HEPCGN_10700at 879.272 kb on - strand, within HEPCGN_10700at 879.286 kb on + strand, within HEPCGN_10700at 879.286 kb on + strand, within HEPCGN_10700at 879.287 kb on - strand, within HEPCGN_10700at 879.287 kb on - strand, within HEPCGN_10700at 879.287 kb on - strand, within HEPCGN_10700at 879.289 kb on - strand, within HEPCGN_10700at 879.330 kb on - strand, within HEPCGN_10700at 879.334 kb on + strand, within HEPCGN_10700at 879.361 kb on - strand, within HEPCGN_10700at 879.418 kb on + strand, within HEPCGN_10700at 879.419 kb on - strand, within HEPCGN_10700at 879.444 kb on + strand, within HEPCGN_10700at 879.444 kb on + strand, within HEPCGN_10700at 879.444 kb on + strand, within HEPCGN_10700at 879.450 kb on + strand, within HEPCGN_10700at 879.450 kb on + strand, within HEPCGN_10700at 879.451 kb on - strand, within HEPCGN_10700at 879.451 kb on - strand, within HEPCGN_10700at 879.589 kb on - strand, within HEPCGN_10700at 879.607 kb on + strand, within HEPCGN_10700

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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877,533 - HEPCGN_10690 0.55 +0.1
877,725 - HEPCGN_10690 0.70 +0.5
877,779 + HEPCGN_10690 0.75 +0.2
877,802 + HEPCGN_10690 0.77 -2.0
877,955 + HEPCGN_10690 0.89 +0.8
877,966 + HEPCGN_10690 0.90 +0.1
877,974 + +0.5
877,975 - -0.2
878,010 - +0.7
878,053 - +0.2
878,297 + -0.2
878,400 + -0.0
878,454 + +0.1
878,454 + -0.4
878,499 - HEPCGN_10695 0.24 -0.5
878,516 + HEPCGN_10695 0.35 -0.5
878,516 + HEPCGN_10695 0.35 +0.4
878,519 + HEPCGN_10695 0.36 +0.8
878,519 + HEPCGN_10695 0.36 +0.8
878,569 + HEPCGN_10695 0.67 -0.2
878,592 - HEPCGN_10695 0.81 -0.1
878,597 + HEPCGN_10695 0.84 -0.7
878,597 + HEPCGN_10695 0.84 +0.1
878,602 + HEPCGN_10695 0.87 -0.5
878,602 + HEPCGN_10695 0.87 -0.1
878,615 - +0.2
878,697 + -0.1
878,878 - -0.9
878,993 - -0.3
878,993 - -0.0
879,047 + +0.3
879,047 + -0.1
879,047 + -3.3
879,047 + -0.2
879,048 - +0.1
879,048 - -1.5
879,058 + -2.0
879,058 + -0.6
879,078 + -0.6
879,079 - -0.6
879,112 + +0.1
879,112 + +0.0
879,113 - +0.3
879,135 + HEPCGN_10700 0.11 +0.5
879,191 + HEPCGN_10700 0.15 -1.4
879,191 + HEPCGN_10700 0.15 +0.1
879,191 + HEPCGN_10700 0.15 +0.2
879,192 - HEPCGN_10700 0.15 +0.1
879,192 - HEPCGN_10700 0.15 +0.6
879,192 - HEPCGN_10700 0.15 -0.4
879,198 - HEPCGN_10700 0.15 -0.7
879,266 - HEPCGN_10700 0.20 +0.6
879,272 - HEPCGN_10700 0.20 -0.3
879,286 + HEPCGN_10700 0.21 -0.2
879,286 + HEPCGN_10700 0.21 -0.0
879,287 - HEPCGN_10700 0.21 -0.7
879,287 - HEPCGN_10700 0.21 +0.0
879,287 - HEPCGN_10700 0.21 +0.2
879,289 - HEPCGN_10700 0.21 -0.2
879,330 - HEPCGN_10700 0.24 +0.0
879,334 + HEPCGN_10700 0.24 -0.2
879,361 - HEPCGN_10700 0.26 +0.6
879,418 + HEPCGN_10700 0.29 -0.1
879,419 - HEPCGN_10700 0.29 -0.2
879,444 + HEPCGN_10700 0.31 -0.9
879,444 + HEPCGN_10700 0.31 +0.1
879,444 + HEPCGN_10700 0.31 +0.1
879,450 + HEPCGN_10700 0.31 +0.0
879,450 + HEPCGN_10700 0.31 +0.1
879,451 - HEPCGN_10700 0.32 -0.3
879,451 - HEPCGN_10700 0.32 -0.3
879,589 - HEPCGN_10700 0.40 +0.1
879,607 + HEPCGN_10700 0.42 -0.2

Or see this region's nucleotide sequence