Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt blaEC and blc are separated by 87 nucleotides blc and sugE overlap by 4 nucleotides sugE and HEPCGN_10605 are separated by 174 nucleotides HEPCGN_10605 and ecnA are separated by 110 nucleotides ecnA and HEPCGN_10615 are separated by 51 nucleotides
HEPCGN_10590: blaEC - BlaEC family class C beta-lactamase, at 860,562 to 861,695
blaEC
HEPCGN_10595: blc - lipocalin Blc, at 861,783 to 862,316
blc
HEPCGN_10600: sugE - quaternary ammonium compound efflux SMR transporter SugE, at 862,313 to 862,630
sugE
HEPCGN_10605: HEPCGN_10605 - Entericidin B, at 862,805 to 862,951
_10605
HEPCGN_10610: ecnA - lipoprotein antitoxin entericidin A, at 863,062 to 863,187
ecnA
HEPCGN_10615: HEPCGN_10615 - Elongation factor P, at 863,239 to 863,805
_10615
Position (kb) 862
863 Strain fitness (log2 ratio) -2
-1
0
1
2 at 861.406 kb on - strand, within blaEC at 861.532 kb on + strand, within blaEC at 861.551 kb on + strand, within blaEC at 861.551 kb on + strand, within blaEC at 861.551 kb on + strand, within blaEC at 861.552 kb on - strand, within blaEC at 861.552 kb on - strand, within blaEC at 861.582 kb on + strand at 861.582 kb on + strand at 861.582 kb on + strand at 861.583 kb on - strand at 861.583 kb on - strand at 861.583 kb on - strand at 861.583 kb on - strand at 861.583 kb on - strand at 861.583 kb on - strand at 861.640 kb on - strand at 861.689 kb on - strand at 861.751 kb on + strand at 861.752 kb on - strand at 861.757 kb on + strand at 861.782 kb on + strand at 861.782 kb on + strand at 861.848 kb on + strand, within blc at 861.879 kb on - strand, within blc at 861.972 kb on + strand, within blc at 861.973 kb on - strand, within blc at 862.007 kb on + strand, within blc at 862.010 kb on + strand, within blc at 862.011 kb on - strand, within blc at 862.018 kb on - strand, within blc at 862.018 kb on - strand, within blc at 862.018 kb on - strand, within blc at 862.062 kb on + strand, within blc at 862.129 kb on - strand, within blc at 862.131 kb on - strand, within blc at 862.131 kb on - strand, within blc at 862.136 kb on + strand, within blc at 862.191 kb on + strand, within blc at 862.192 kb on - strand, within blc at 862.202 kb on - strand, within blc at 862.283 kb on + strand at 862.284 kb on - strand at 862.284 kb on - strand at 862.289 kb on + strand at 862.297 kb on + strand at 862.339 kb on + strand at 862.340 kb on - strand at 862.529 kb on - strand, within sugE at 862.566 kb on + strand, within sugE at 862.610 kb on - strand at 862.618 kb on + strand at 862.618 kb on + strand at 862.618 kb on + strand at 862.631 kb on - strand at 862.742 kb on + strand at 862.785 kb on - strand at 862.793 kb on + strand at 862.799 kb on + strand at 862.806 kb on + strand at 862.895 kb on + strand, within HEPCGN_10605 at 862.895 kb on + strand, within HEPCGN_10605 at 862.896 kb on - strand, within HEPCGN_10605 at 862.896 kb on - strand, within HEPCGN_10605 at 862.970 kb on - strand at 862.980 kb on - strand at 862.991 kb on + strand at 863.002 kb on + strand at 863.005 kb on + strand at 863.006 kb on - strand at 863.101 kb on - strand, within ecnA at 863.200 kb on + strand at 863.201 kb on - strand at 863.240 kb on + strand at 863.241 kb on - strand at 863.258 kb on + strand at 863.259 kb on - strand at 863.580 kb on - strand, within HEPCGN_10615 at 863.586 kb on - strand, within HEPCGN_10615 at 863.586 kb on - strand, within HEPCGN_10615
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 861,406 - blaEC HEPCGN_10590 0.74 +0.5 861,532 + blaEC HEPCGN_10590 0.86 +0.4 861,551 + blaEC HEPCGN_10590 0.87 +1.1 861,551 + blaEC HEPCGN_10590 0.87 +0.5 861,551 + blaEC HEPCGN_10590 0.87 -0.1 861,552 - blaEC HEPCGN_10590 0.87 +0.0 861,552 - blaEC HEPCGN_10590 0.87 -0.3 861,582 + -0.3 861,582 + +0.7 861,582 + -0.5 861,583 - +0.5 861,583 - +0.1 861,583 - -0.2 861,583 - -0.1 861,583 - +1.2 861,583 - +0.2 861,640 - -0.1 861,689 - -0.3 861,751 + +1.9 861,752 - -0.0 861,757 + -0.7 861,782 + -0.2 861,782 + +0.1 861,848 + blc HEPCGN_10595 0.12 -0.4 861,879 - blc HEPCGN_10595 0.18 -1.9 861,972 + blc HEPCGN_10595 0.35 +0.3 861,973 - blc HEPCGN_10595 0.36 -0.5 862,007 + blc HEPCGN_10595 0.42 -0.1 862,010 + blc HEPCGN_10595 0.43 -0.5 862,011 - blc HEPCGN_10595 0.43 -0.7 862,018 - blc HEPCGN_10595 0.44 +0.4 862,018 - blc HEPCGN_10595 0.44 -0.2 862,018 - blc HEPCGN_10595 0.44 -1.9 862,062 + blc HEPCGN_10595 0.52 -0.1 862,129 - blc HEPCGN_10595 0.65 +1.4 862,131 - blc HEPCGN_10595 0.65 +0.4 862,131 - blc HEPCGN_10595 0.65 -1.0 862,136 + blc HEPCGN_10595 0.66 -0.8 862,191 + blc HEPCGN_10595 0.76 -0.1 862,192 - blc HEPCGN_10595 0.77 +0.8 862,202 - blc HEPCGN_10595 0.78 +1.0 862,283 + -0.1 862,284 - +0.3 862,284 - +0.3 862,289 + +0.1 862,297 + -0.6 862,339 + +1.4 862,340 - +0.6 862,529 - sugE HEPCGN_10600 0.68 -0.1 862,566 + sugE HEPCGN_10600 0.80 +0.3 862,610 - +0.1 862,618 + +0.9 862,618 + +0.4 862,618 + +0.9 862,631 - -0.0 862,742 + -0.2 862,785 - +0.2 862,793 + -2.2 862,799 + -0.7 862,806 + -1.5 862,895 + HEPCGN_10605 0.61 +0.9 862,895 + HEPCGN_10605 0.61 +0.5 862,896 - HEPCGN_10605 0.62 +0.1 862,896 - HEPCGN_10605 0.62 -0.2 862,970 - +0.1 862,980 - +0.6 862,991 + -0.5 863,002 + -0.9 863,005 + +0.3 863,006 - -0.7 863,101 - ecnA HEPCGN_10610 0.31 +0.1 863,200 + -0.2 863,201 - +0.2 863,240 + -0.8 863,241 - +0.4 863,258 + -2.0 863,259 - -2.3 863,580 - HEPCGN_10615 0.60 -0.7 863,586 - HEPCGN_10615 0.61 -2.1 863,586 - HEPCGN_10615 0.61 -1.5
Or see this region's nucleotide sequence