Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_09240 and yjjI overlap by 4 nucleotides yjjI and HEPCGN_09250 are separated by 130 nucleotides HEPCGN_09250 and tatD are separated by 216 nucleotides tatD and yjjU overlap by 4 nucleotides
HEPCGN_09240: HEPCGN_09240 - Glycine radical enzyme, YjjI family, at 596,034 to 596,738
_09240
HEPCGN_09245: yjjI - YjjI family glycine radical enzyme, at 596,735 to 597,586
yjjI
HEPCGN_09250: HEPCGN_09250 - Putative glycyl-radical enzyme activating enzyme YjjW, at 597,717 to 598,421
_09250
HEPCGN_09265: tatD - metal-dependent hydrolase, at 598,638 to 599,417
tatD
HEPCGN_09270: yjjU - Uncharacterized protein YjjU, at 599,414 to 600,487
yjjU
Position (kb) 597
598
599 Strain fitness (log2 ratio) -2
-1
0
1
2 at 596.959 kb on + strand, within yjjI at 596.993 kb on + strand, within yjjI at 596.993 kb on + strand, within yjjI at 596.994 kb on - strand, within yjjI at 596.994 kb on - strand, within yjjI at 596.994 kb on - strand, within yjjI at 597.177 kb on + strand, within yjjI at 597.275 kb on + strand, within yjjI at 597.275 kb on + strand, within yjjI at 597.275 kb on + strand, within yjjI at 597.278 kb on + strand, within yjjI at 597.278 kb on + strand, within yjjI at 597.329 kb on - strand, within yjjI at 597.345 kb on + strand, within yjjI at 597.345 kb on + strand, within yjjI at 597.367 kb on + strand, within yjjI at 597.432 kb on - strand, within yjjI at 597.432 kb on - strand, within yjjI at 597.433 kb on + strand, within yjjI at 597.433 kb on + strand, within yjjI at 597.433 kb on + strand, within yjjI at 597.433 kb on + strand, within yjjI at 597.434 kb on - strand, within yjjI at 597.434 kb on - strand, within yjjI at 597.434 kb on - strand, within yjjI at 597.434 kb on - strand, within yjjI at 597.434 kb on - strand, within yjjI at 597.490 kb on + strand, within yjjI at 597.552 kb on + strand at 597.798 kb on - strand, within HEPCGN_09250 at 597.959 kb on + strand, within HEPCGN_09250 at 598.114 kb on + strand, within HEPCGN_09250 at 598.115 kb on - strand, within HEPCGN_09250 at 598.199 kb on - strand, within HEPCGN_09250 at 598.218 kb on + strand, within HEPCGN_09250 at 598.308 kb on + strand, within HEPCGN_09250 at 598.309 kb on - strand, within HEPCGN_09250 at 598.399 kb on + strand at 598.400 kb on - strand at 598.412 kb on - strand at 598.412 kb on - strand at 598.413 kb on + strand at 598.413 kb on + strand at 598.413 kb on + strand at 598.414 kb on - strand at 598.467 kb on + strand at 598.467 kb on + strand at 598.539 kb on + strand at 598.560 kb on - strand at 598.569 kb on - strand at 598.640 kb on - strand at 598.660 kb on + strand at 598.660 kb on + strand at 598.660 kb on + strand at 598.660 kb on + strand at 598.660 kb on + strand at 598.660 kb on + strand at 598.661 kb on - strand at 598.668 kb on - strand at 598.670 kb on + strand at 598.670 kb on + strand at 598.710 kb on + strand at 598.710 kb on + strand at 598.787 kb on + strand, within tatD at 598.868 kb on - strand, within tatD at 598.874 kb on + strand, within tatD at 598.874 kb on + strand, within tatD at 598.982 kb on + strand, within tatD at 598.983 kb on - strand, within tatD at 599.073 kb on + strand, within tatD at 599.175 kb on + strand, within tatD at 599.176 kb on - strand, within tatD at 599.213 kb on + strand, within tatD at 599.213 kb on + strand, within tatD at 599.213 kb on + strand, within tatD at 599.213 kb on + strand, within tatD at 599.366 kb on + strand at 599.414 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 596,959 + yjjI HEPCGN_09245 0.26 +0.4 596,993 + yjjI HEPCGN_09245 0.30 +1.8 596,993 + yjjI HEPCGN_09245 0.30 -0.3 596,994 - yjjI HEPCGN_09245 0.30 +0.1 596,994 - yjjI HEPCGN_09245 0.30 -1.9 596,994 - yjjI HEPCGN_09245 0.30 +0.3 597,177 + yjjI HEPCGN_09245 0.52 -0.2 597,275 + yjjI HEPCGN_09245 0.63 +0.1 597,275 + yjjI HEPCGN_09245 0.63 -0.7 597,275 + yjjI HEPCGN_09245 0.63 -0.3 597,278 + yjjI HEPCGN_09245 0.64 +0.1 597,278 + yjjI HEPCGN_09245 0.64 -1.3 597,329 - yjjI HEPCGN_09245 0.70 +1.2 597,345 + yjjI HEPCGN_09245 0.72 -0.2 597,345 + yjjI HEPCGN_09245 0.72 -0.1 597,367 + yjjI HEPCGN_09245 0.74 +0.9 597,432 - yjjI HEPCGN_09245 0.82 +1.0 597,432 - yjjI HEPCGN_09245 0.82 -0.7 597,433 + yjjI HEPCGN_09245 0.82 +0.3 597,433 + yjjI HEPCGN_09245 0.82 -0.6 597,433 + yjjI HEPCGN_09245 0.82 -0.2 597,433 + yjjI HEPCGN_09245 0.82 +0.2 597,434 - yjjI HEPCGN_09245 0.82 +0.0 597,434 - yjjI HEPCGN_09245 0.82 -0.0 597,434 - yjjI HEPCGN_09245 0.82 -0.7 597,434 - yjjI HEPCGN_09245 0.82 +0.2 597,434 - yjjI HEPCGN_09245 0.82 -1.0 597,490 + yjjI HEPCGN_09245 0.89 -0.1 597,552 + +0.1 597,798 - HEPCGN_09250 0.11 -1.8 597,959 + HEPCGN_09250 0.34 +0.5 598,114 + HEPCGN_09250 0.56 -0.2 598,115 - HEPCGN_09250 0.56 +0.9 598,199 - HEPCGN_09250 0.68 +0.2 598,218 + HEPCGN_09250 0.71 +0.2 598,308 + HEPCGN_09250 0.84 -0.9 598,309 - HEPCGN_09250 0.84 -1.0 598,399 + -0.0 598,400 - -0.8 598,412 - +0.1 598,412 - +0.6 598,413 + +0.3 598,413 + -0.0 598,413 + +0.4 598,414 - -0.8 598,467 + +0.1 598,467 + -0.4 598,539 + -0.2 598,560 - -0.3 598,569 - -0.1 598,640 - +0.6 598,660 + +0.5 598,660 + -1.6 598,660 + +0.3 598,660 + -0.5 598,660 + -0.1 598,660 + -0.1 598,661 - +1.8 598,668 - -0.3 598,670 + -0.3 598,670 + -0.5 598,710 + +0.1 598,710 + -0.0 598,787 + tatD HEPCGN_09265 0.19 +0.8 598,868 - tatD HEPCGN_09265 0.29 -0.4 598,874 + tatD HEPCGN_09265 0.30 +0.0 598,874 + tatD HEPCGN_09265 0.30 +0.2 598,982 + tatD HEPCGN_09265 0.44 -0.2 598,983 - tatD HEPCGN_09265 0.44 +0.4 599,073 + tatD HEPCGN_09265 0.56 +0.2 599,175 + tatD HEPCGN_09265 0.69 +0.0 599,176 - tatD HEPCGN_09265 0.69 -0.5 599,213 + tatD HEPCGN_09265 0.74 +0.1 599,213 + tatD HEPCGN_09265 0.74 -2.4 599,213 + tatD HEPCGN_09265 0.74 -0.0 599,213 + tatD HEPCGN_09265 0.74 +0.0 599,366 + +0.4 599,414 + +0.2
Or see this region's nucleotide sequence