Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mdlB and mdlA overlap by 8 nucleotides mdlA and decR are separated by 29 nucleotides decR and cof are separated by 152 nucleotides
HEPCGN_06885: mdlB - SmdB family multidrug efflux ABC transporter permease/ATP-binding protein, at 110,811 to 112,592
mdlB
HEPCGN_06890: mdlA - SmdA family multidrug ABC transporter permease/ATP-binding protein, at 112,585 to 114,357
mdlA
HEPCGN_06895: decR - DNA-binding transcriptional regulator DecR, at 114,387 to 114,845
decR
HEPCGN_06900: cof - HMP-PP phosphatase, at 114,998 to 115,816
cof
Position (kb) 112
113
114
115 Strain fitness (log2 ratio) -2
-1
0
1 at 111.731 kb on + strand, within mdlB at 111.732 kb on - strand, within mdlB at 111.739 kb on + strand, within mdlB at 111.739 kb on + strand, within mdlB at 111.740 kb on - strand, within mdlB at 111.740 kb on - strand, within mdlB at 111.740 kb on - strand, within mdlB at 111.740 kb on - strand, within mdlB at 111.878 kb on + strand, within mdlB at 111.878 kb on + strand, within mdlB at 111.879 kb on - strand, within mdlB at 111.879 kb on - strand, within mdlB at 111.880 kb on + strand, within mdlB at 111.880 kb on + strand, within mdlB at 111.880 kb on + strand, within mdlB at 111.880 kb on + strand, within mdlB at 111.880 kb on + strand, within mdlB at 111.880 kb on + strand, within mdlB at 111.881 kb on - strand, within mdlB at 111.881 kb on - strand, within mdlB at 111.881 kb on - strand, within mdlB at 112.039 kb on + strand, within mdlB at 112.039 kb on + strand, within mdlB at 112.039 kb on + strand, within mdlB at 112.040 kb on - strand, within mdlB at 112.042 kb on - strand, within mdlB at 112.042 kb on - strand, within mdlB at 112.042 kb on - strand, within mdlB at 112.167 kb on + strand, within mdlB at 112.267 kb on - strand, within mdlB at 112.290 kb on - strand, within mdlB at 112.351 kb on - strand, within mdlB at 112.421 kb on + strand at 112.422 kb on - strand at 112.424 kb on + strand at 112.425 kb on - strand at 112.436 kb on + strand at 112.437 kb on - strand at 112.437 kb on - strand at 112.457 kb on + strand at 112.457 kb on + strand at 112.458 kb on - strand at 112.527 kb on - strand at 112.549 kb on - strand at 112.586 kb on + strand at 112.587 kb on - strand at 112.655 kb on + strand at 112.655 kb on + strand at 112.655 kb on + strand at 112.655 kb on + strand at 112.659 kb on + strand at 112.659 kb on + strand at 112.660 kb on - strand at 112.716 kb on + strand at 112.717 kb on - strand at 112.894 kb on + strand, within mdlA at 112.894 kb on + strand, within mdlA at 112.895 kb on - strand, within mdlA at 112.895 kb on - strand, within mdlA at 112.973 kb on + strand, within mdlA at 112.974 kb on - strand, within mdlA at 112.984 kb on + strand, within mdlA at 113.167 kb on - strand, within mdlA at 113.169 kb on - strand, within mdlA at 113.332 kb on - strand, within mdlA at 113.343 kb on + strand, within mdlA at 113.344 kb on - strand, within mdlA at 113.347 kb on + strand, within mdlA at 113.347 kb on + strand, within mdlA at 113.399 kb on - strand, within mdlA at 113.506 kb on + strand, within mdlA at 113.507 kb on - strand, within mdlA at 113.507 kb on - strand, within mdlA at 113.510 kb on + strand, within mdlA at 113.511 kb on - strand, within mdlA at 113.511 kb on - strand, within mdlA at 113.511 kb on - strand, within mdlA at 113.612 kb on + strand, within mdlA at 113.612 kb on + strand, within mdlA at 113.641 kb on - strand, within mdlA at 113.693 kb on - strand, within mdlA at 113.733 kb on + strand, within mdlA at 113.734 kb on - strand, within mdlA at 113.769 kb on + strand, within mdlA at 113.770 kb on - strand, within mdlA at 113.800 kb on - strand, within mdlA at 113.872 kb on + strand, within mdlA at 113.873 kb on - strand, within mdlA at 113.898 kb on + strand, within mdlA at 113.908 kb on - strand, within mdlA at 113.908 kb on - strand, within mdlA at 114.035 kb on + strand, within mdlA at 114.035 kb on + strand, within mdlA at 114.071 kb on + strand, within mdlA at 114.072 kb on - strand, within mdlA at 114.101 kb on + strand, within mdlA at 114.101 kb on + strand, within mdlA at 114.101 kb on + strand, within mdlA at 114.134 kb on + strand, within mdlA at 114.135 kb on - strand, within mdlA at 114.204 kb on + strand at 114.237 kb on + strand at 114.337 kb on + strand at 114.349 kb on + strand at 114.412 kb on + strand at 114.416 kb on + strand at 114.417 kb on - strand at 114.532 kb on + strand, within decR at 114.533 kb on - strand, within decR at 114.538 kb on + strand, within decR at 114.807 kb on + strand at 114.808 kb on - strand at 114.824 kb on + strand at 114.840 kb on + strand at 114.840 kb on + strand at 114.840 kb on + strand at 114.841 kb on - strand at 114.845 kb on + strand at 114.845 kb on + strand at 114.846 kb on - strand at 114.876 kb on + strand at 114.909 kb on + strand at 115.012 kb on - strand at 115.016 kb on + strand at 115.016 kb on + strand at 115.016 kb on + strand at 115.017 kb on - strand at 115.017 kb on - strand at 115.017 kb on - strand at 115.017 kb on - strand at 115.212 kb on - strand, within cof at 115.217 kb on + strand, within cof at 115.218 kb on - strand, within cof at 115.329 kb on + strand, within cof at 115.330 kb on - strand, within cof at 115.351 kb on + strand, within cof at 115.352 kb on - strand, within cof
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 111,731 + mdlB HEPCGN_06885 0.52 -0.3 111,732 - mdlB HEPCGN_06885 0.52 +0.5 111,739 + mdlB HEPCGN_06885 0.52 -0.6 111,739 + mdlB HEPCGN_06885 0.52 -1.5 111,740 - mdlB HEPCGN_06885 0.52 -0.2 111,740 - mdlB HEPCGN_06885 0.52 -0.7 111,740 - mdlB HEPCGN_06885 0.52 -0.0 111,740 - mdlB HEPCGN_06885 0.52 +0.5 111,878 + mdlB HEPCGN_06885 0.60 +0.1 111,878 + mdlB HEPCGN_06885 0.60 -1.0 111,879 - mdlB HEPCGN_06885 0.60 -0.4 111,879 - mdlB HEPCGN_06885 0.60 +0.3 111,880 + mdlB HEPCGN_06885 0.60 +0.3 111,880 + mdlB HEPCGN_06885 0.60 +0.1 111,880 + mdlB HEPCGN_06885 0.60 +0.3 111,880 + mdlB HEPCGN_06885 0.60 +0.7 111,880 + mdlB HEPCGN_06885 0.60 +0.7 111,880 + mdlB HEPCGN_06885 0.60 -2.1 111,881 - mdlB HEPCGN_06885 0.60 -0.1 111,881 - mdlB HEPCGN_06885 0.60 +0.6 111,881 - mdlB HEPCGN_06885 0.60 +0.4 112,039 + mdlB HEPCGN_06885 0.69 -0.6 112,039 + mdlB HEPCGN_06885 0.69 +0.7 112,039 + mdlB HEPCGN_06885 0.69 -0.1 112,040 - mdlB HEPCGN_06885 0.69 +0.2 112,042 - mdlB HEPCGN_06885 0.69 -0.4 112,042 - mdlB HEPCGN_06885 0.69 -0.7 112,042 - mdlB HEPCGN_06885 0.69 +0.8 112,167 + mdlB HEPCGN_06885 0.76 +0.5 112,267 - mdlB HEPCGN_06885 0.82 -0.0 112,290 - mdlB HEPCGN_06885 0.83 +0.9 112,351 - mdlB HEPCGN_06885 0.86 +0.6 112,421 + +0.3 112,422 - +0.6 112,424 + -0.4 112,425 - -0.9 112,436 + +0.2 112,437 - +1.0 112,437 - -0.3 112,457 + -0.0 112,457 + -0.1 112,458 - +0.5 112,527 - -0.4 112,549 - -0.5 112,586 + -0.5 112,587 - +0.6 112,655 + +0.3 112,655 + +0.1 112,655 + +0.0 112,655 + -0.0 112,659 + +0.2 112,659 + -0.9 112,660 - +0.7 112,716 + -1.9 112,717 - -0.0 112,894 + mdlA HEPCGN_06890 0.17 -1.8 112,894 + mdlA HEPCGN_06890 0.17 +0.0 112,895 - mdlA HEPCGN_06890 0.17 +0.4 112,895 - mdlA HEPCGN_06890 0.17 +0.8 112,973 + mdlA HEPCGN_06890 0.22 -0.6 112,974 - mdlA HEPCGN_06890 0.22 -0.4 112,984 + mdlA HEPCGN_06890 0.23 -0.4 113,167 - mdlA HEPCGN_06890 0.33 -0.4 113,169 - mdlA HEPCGN_06890 0.33 +0.3 113,332 - mdlA HEPCGN_06890 0.42 +0.2 113,343 + mdlA HEPCGN_06890 0.43 +0.4 113,344 - mdlA HEPCGN_06890 0.43 -0.1 113,347 + mdlA HEPCGN_06890 0.43 +0.8 113,347 + mdlA HEPCGN_06890 0.43 +0.0 113,399 - mdlA HEPCGN_06890 0.46 -0.0 113,506 + mdlA HEPCGN_06890 0.52 +0.6 113,507 - mdlA HEPCGN_06890 0.52 -1.0 113,507 - mdlA HEPCGN_06890 0.52 +0.2 113,510 + mdlA HEPCGN_06890 0.52 +0.8 113,511 - mdlA HEPCGN_06890 0.52 +0.8 113,511 - mdlA HEPCGN_06890 0.52 +0.3 113,511 - mdlA HEPCGN_06890 0.52 +0.1 113,612 + mdlA HEPCGN_06890 0.58 +0.2 113,612 + mdlA HEPCGN_06890 0.58 +0.7 113,641 - mdlA HEPCGN_06890 0.60 +0.1 113,693 - mdlA HEPCGN_06890 0.62 +0.5 113,733 + mdlA HEPCGN_06890 0.65 -0.3 113,734 - mdlA HEPCGN_06890 0.65 -0.6 113,769 + mdlA HEPCGN_06890 0.67 +0.8 113,770 - mdlA HEPCGN_06890 0.67 +0.2 113,800 - mdlA HEPCGN_06890 0.69 +0.7 113,872 + mdlA HEPCGN_06890 0.73 -0.0 113,873 - mdlA HEPCGN_06890 0.73 -0.2 113,898 + mdlA HEPCGN_06890 0.74 -0.2 113,908 - mdlA HEPCGN_06890 0.75 +0.8 113,908 - mdlA HEPCGN_06890 0.75 +0.3 114,035 + mdlA HEPCGN_06890 0.82 +0.2 114,035 + mdlA HEPCGN_06890 0.82 -0.3 114,071 + mdlA HEPCGN_06890 0.84 +0.4 114,072 - mdlA HEPCGN_06890 0.84 -0.9 114,101 + mdlA HEPCGN_06890 0.86 +0.6 114,101 + mdlA HEPCGN_06890 0.86 -0.5 114,101 + mdlA HEPCGN_06890 0.86 +0.2 114,134 + mdlA HEPCGN_06890 0.87 -0.0 114,135 - mdlA HEPCGN_06890 0.87 +0.1 114,204 + +0.0 114,237 + -0.1 114,337 + +0.1 114,349 + -0.5 114,412 + +0.3 114,416 + +0.1 114,417 - +0.2 114,532 + decR HEPCGN_06895 0.32 -0.1 114,533 - decR HEPCGN_06895 0.32 -1.3 114,538 + decR HEPCGN_06895 0.33 +0.0 114,807 + +0.2 114,808 - +1.2 114,824 + -0.2 114,840 + -0.5 114,840 + -0.2 114,840 + +0.2 114,841 - +1.1 114,845 + +1.4 114,845 + -0.3 114,846 - -0.3 114,876 + +0.3 114,909 + -0.1 115,012 - -0.8 115,016 + -1.1 115,016 + +0.3 115,016 + -1.3 115,017 - +0.6 115,017 - +0.1 115,017 - +0.4 115,017 - -0.2 115,212 - cof HEPCGN_06900 0.26 +0.3 115,217 + cof HEPCGN_06900 0.27 +1.4 115,218 - cof HEPCGN_06900 0.27 +0.4 115,329 + cof HEPCGN_06900 0.40 +0.2 115,330 - cof HEPCGN_06900 0.41 -0.3 115,351 + cof HEPCGN_06900 0.43 -1.8 115,352 - cof HEPCGN_06900 0.43 -0.7
Or see this region's nucleotide sequence