Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt acrB and tomB are separated by 544 nucleotides tomB and tomB are separated by 25 nucleotides tomB and maa are separated by 171 nucleotides
HEPCGN_06820: acrB - efflux RND transporter permease AcrB, at 98,827 to 101,976
acrB
HEPCGN_06825: tomB - Hha toxicity modulator TomB, at 102,521 to 102,895
tomB
HEPCGN_06830: tomB - Hha toxicity modulator TomB, at 102,921 to 103,139
tomB
HEPCGN_06835: maa - maltose O-acetyltransferase, at 103,311 to 103,862
maa
Position (kb) 102
103 Strain fitness (log2 ratio) -2
-1
0
1
2 at 101.612 kb on + strand, within acrB at 101.659 kb on - strand, within acrB at 101.978 kb on - strand at 102.023 kb on + strand at 102.029 kb on - strand at 102.029 kb on - strand at 102.087 kb on - strand at 102.097 kb on - strand at 102.123 kb on - strand at 102.127 kb on - strand at 102.133 kb on + strand at 102.137 kb on - strand at 102.141 kb on - strand at 102.226 kb on - strand at 102.250 kb on + strand at 102.254 kb on - strand at 102.254 kb on - strand at 102.338 kb on + strand at 102.339 kb on - strand at 102.422 kb on + strand at 102.424 kb on + strand at 102.424 kb on + strand at 102.428 kb on + strand at 102.428 kb on + strand at 102.429 kb on - strand at 102.429 kb on - strand at 102.433 kb on + strand at 102.531 kb on - strand at 102.701 kb on - strand, within tomB at 102.704 kb on + strand, within tomB at 102.717 kb on - strand, within tomB at 102.719 kb on - strand, within tomB at 102.772 kb on + strand, within tomB at 102.788 kb on + strand, within tomB at 102.788 kb on + strand, within tomB at 102.789 kb on - strand, within tomB at 102.794 kb on - strand, within tomB at 102.796 kb on + strand, within tomB at 102.797 kb on - strand, within tomB at 102.833 kb on - strand, within tomB at 102.914 kb on + strand at 102.920 kb on + strand at 103.024 kb on + strand, within tomB at 103.086 kb on - strand, within tomB at 103.091 kb on + strand, within tomB at 103.091 kb on + strand, within tomB at 103.099 kb on - strand, within tomB at 103.141 kb on - strand at 103.216 kb on - strand at 103.239 kb on + strand at 103.350 kb on + strand at 103.372 kb on + strand, within maa at 103.491 kb on + strand, within maa at 103.492 kb on - strand, within maa at 103.492 kb on - strand, within maa at 103.493 kb on + strand, within maa at 103.493 kb on + strand, within maa at 103.494 kb on - strand, within maa at 103.524 kb on + strand, within maa at 103.526 kb on + strand, within maa at 103.605 kb on - strand, within maa at 103.605 kb on - strand, within maa at 103.610 kb on + strand, within maa at 103.611 kb on - strand, within maa at 103.635 kb on + strand, within maa at 103.664 kb on - strand, within maa
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 101,612 + acrB HEPCGN_06820 0.88 +0.3 101,659 - acrB HEPCGN_06820 0.90 -0.9 101,978 - -0.4 102,023 + -0.7 102,029 - +0.1 102,029 - +1.6 102,087 - -0.5 102,097 - +0.1 102,123 - +0.6 102,127 - +0.1 102,133 + +0.5 102,137 - +0.2 102,141 - +0.2 102,226 - +0.1 102,250 + +0.1 102,254 - +0.0 102,254 - +0.3 102,338 + +0.6 102,339 - +1.0 102,422 + +0.2 102,424 + -0.9 102,424 + -0.4 102,428 + -1.4 102,428 + -0.1 102,429 - +0.4 102,429 - +0.3 102,433 + -0.8 102,531 - -0.0 102,701 - tomB HEPCGN_06825 0.48 -0.1 102,704 + tomB HEPCGN_06825 0.49 -0.2 102,717 - tomB HEPCGN_06825 0.52 -0.8 102,719 - tomB HEPCGN_06825 0.53 +0.2 102,772 + tomB HEPCGN_06825 0.67 -0.5 102,788 + tomB HEPCGN_06825 0.71 -0.0 102,788 + tomB HEPCGN_06825 0.71 -0.5 102,789 - tomB HEPCGN_06825 0.71 -0.6 102,794 - tomB HEPCGN_06825 0.73 -0.4 102,796 + tomB HEPCGN_06825 0.73 -0.2 102,797 - tomB HEPCGN_06825 0.74 +0.3 102,833 - tomB HEPCGN_06825 0.83 -0.6 102,914 + -0.2 102,920 + -0.3 103,024 + tomB HEPCGN_06830 0.47 +1.2 103,086 - tomB HEPCGN_06830 0.75 +0.2 103,091 + tomB HEPCGN_06830 0.78 +0.2 103,091 + tomB HEPCGN_06830 0.78 +0.5 103,099 - tomB HEPCGN_06830 0.81 +1.8 103,141 - -0.1 103,216 - +1.7 103,239 + +0.0 103,350 + +1.2 103,372 + maa HEPCGN_06835 0.11 +0.2 103,491 + maa HEPCGN_06835 0.33 -2.3 103,492 - maa HEPCGN_06835 0.33 +0.1 103,492 - maa HEPCGN_06835 0.33 -0.7 103,493 + maa HEPCGN_06835 0.33 +0.5 103,493 + maa HEPCGN_06835 0.33 +0.2 103,494 - maa HEPCGN_06835 0.33 +0.7 103,524 + maa HEPCGN_06835 0.39 -0.9 103,526 + maa HEPCGN_06835 0.39 +0.9 103,605 - maa HEPCGN_06835 0.53 -2.5 103,605 - maa HEPCGN_06835 0.53 +0.6 103,610 + maa HEPCGN_06835 0.54 -0.0 103,611 - maa HEPCGN_06835 0.54 -0.2 103,635 + maa HEPCGN_06835 0.59 -0.9 103,664 - maa HEPCGN_06835 0.64 +0.7
Or see this region's nucleotide sequence