Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yecA and tyrP are separated by 49 nucleotides tyrP and yecH are separated by 190 nucleotides yecH and ftnA are separated by 37 nucleotides
HEPCGN_04450: yecA - UPF0149 family protein YecA, at 774,332 to 774,997
yecA
HEPCGN_04455: tyrP - tyrosine transporter TyrP, at 775,047 to 776,258
tyrP
HEPCGN_04460: yecH - Uncharacterized protein YecH, at 776,449 to 776,688
yecH
HEPCGN_04465: ftnA - non-heme ferritin, at 776,726 to 777,223
ftnA
Position (kb) 775
776
777 Strain fitness (log2 ratio) -2
-1
0
1
2 at 774.222 kb on + strand at 774.267 kb on + strand at 774.290 kb on + strand at 774.290 kb on + strand at 774.290 kb on + strand at 774.291 kb on - strand at 774.393 kb on - strand at 774.393 kb on - strand at 774.578 kb on - strand, within yecA at 774.692 kb on + strand, within yecA at 774.693 kb on - strand, within yecA at 774.694 kb on + strand, within yecA at 774.694 kb on + strand, within yecA at 774.834 kb on + strand, within yecA at 774.834 kb on + strand, within yecA at 774.864 kb on + strand, within yecA at 774.864 kb on + strand, within yecA at 774.872 kb on + strand, within yecA at 774.872 kb on + strand, within yecA at 774.995 kb on + strand at 774.995 kb on + strand at 774.996 kb on - strand at 775.038 kb on - strand at 775.107 kb on - strand at 775.222 kb on - strand, within tyrP at 775.429 kb on - strand, within tyrP at 775.509 kb on - strand, within tyrP at 775.545 kb on - strand, within tyrP at 775.604 kb on + strand, within tyrP at 775.642 kb on + strand, within tyrP at 775.643 kb on - strand, within tyrP at 775.653 kb on - strand, within tyrP at 775.774 kb on - strand, within tyrP at 775.774 kb on - strand, within tyrP at 775.914 kb on - strand, within tyrP at 775.967 kb on - strand, within tyrP at 775.985 kb on - strand, within tyrP at 775.985 kb on - strand, within tyrP at 776.001 kb on - strand, within tyrP at 776.101 kb on - strand, within tyrP at 776.283 kb on + strand at 776.297 kb on - strand at 776.358 kb on + strand at 776.408 kb on - strand at 776.427 kb on - strand at 776.458 kb on - strand at 776.481 kb on + strand, within yecH at 776.482 kb on - strand, within yecH at 776.508 kb on + strand, within yecH at 776.536 kb on - strand, within yecH at 776.728 kb on - strand at 776.802 kb on - strand, within ftnA at 776.856 kb on + strand, within ftnA at 777.046 kb on - strand, within ftnA at 777.126 kb on + strand, within ftnA at 777.127 kb on - strand, within ftnA at 777.243 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 774,222 + -0.5 774,267 + -0.9 774,290 + +0.0 774,290 + +0.4 774,290 + +1.2 774,291 - +0.1 774,393 - +0.1 774,393 - -0.2 774,578 - yecA HEPCGN_04450 0.37 -0.1 774,692 + yecA HEPCGN_04450 0.54 -0.9 774,693 - yecA HEPCGN_04450 0.54 +0.2 774,694 + yecA HEPCGN_04450 0.54 +0.5 774,694 + yecA HEPCGN_04450 0.54 +0.3 774,834 + yecA HEPCGN_04450 0.75 -0.7 774,834 + yecA HEPCGN_04450 0.75 +1.2 774,864 + yecA HEPCGN_04450 0.80 +1.1 774,864 + yecA HEPCGN_04450 0.80 +0.5 774,872 + yecA HEPCGN_04450 0.81 +0.6 774,872 + yecA HEPCGN_04450 0.81 +0.2 774,995 + -0.0 774,995 + +1.0 774,996 - +0.3 775,038 - -0.1 775,107 - +0.5 775,222 - tyrP HEPCGN_04455 0.14 +0.7 775,429 - tyrP HEPCGN_04455 0.32 +0.2 775,509 - tyrP HEPCGN_04455 0.38 +0.5 775,545 - tyrP HEPCGN_04455 0.41 -0.7 775,604 + tyrP HEPCGN_04455 0.46 +0.2 775,642 + tyrP HEPCGN_04455 0.49 +0.8 775,643 - tyrP HEPCGN_04455 0.49 +0.4 775,653 - tyrP HEPCGN_04455 0.50 +0.3 775,774 - tyrP HEPCGN_04455 0.60 +1.0 775,774 - tyrP HEPCGN_04455 0.60 -1.5 775,914 - tyrP HEPCGN_04455 0.72 +0.4 775,967 - tyrP HEPCGN_04455 0.76 +0.1 775,985 - tyrP HEPCGN_04455 0.77 -1.9 775,985 - tyrP HEPCGN_04455 0.77 +1.0 776,001 - tyrP HEPCGN_04455 0.79 +0.2 776,101 - tyrP HEPCGN_04455 0.87 -0.4 776,283 + +1.9 776,297 - -2.4 776,358 + +0.3 776,408 - +0.3 776,427 - -1.4 776,458 - +0.4 776,481 + yecH HEPCGN_04460 0.13 -0.9 776,482 - yecH HEPCGN_04460 0.14 +0.1 776,508 + yecH HEPCGN_04460 0.25 -0.5 776,536 - yecH HEPCGN_04460 0.36 +0.3 776,728 - +0.2 776,802 - ftnA HEPCGN_04465 0.15 +0.0 776,856 + ftnA HEPCGN_04465 0.26 +0.5 777,046 - ftnA HEPCGN_04465 0.64 +0.2 777,126 + ftnA HEPCGN_04465 0.80 +0.6 777,127 - ftnA HEPCGN_04465 0.81 -0.1 777,243 + +0.1
Or see this region's nucleotide sequence