Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_04260 and HEPCGN_04265 overlap by 8 nucleotides HEPCGN_04265 and HEPCGN_04270 are separated by 3 nucleotides HEPCGN_04270 and HEPCGN_04275 overlap by 4 nucleotides HEPCGN_04275 and HEPCGN_04280 overlap by 4 nucleotides
HEPCGN_04260: HEPCGN_04260 - phage tail protein I, at 748,247 to 748,855
_04260
HEPCGN_04265: HEPCGN_04265 - baseplate assembly protein, at 748,848 to 749,744
_04265
HEPCGN_04270: HEPCGN_04270 - baseplate assembly protein, at 749,748 to 750,098
_04270
HEPCGN_04275: HEPCGN_04275 - phage baseplate assembly protein V, at 750,095 to 750,676
_04275
HEPCGN_04280: HEPCGN_04280 - phage virion morphogenesis protein, at 750,673 to 751,317
_04280
Position (kb) 749
750
751 Strain fitness (log2 ratio) -1
0
1 at 748.850 kb on - strand at 748.919 kb on + strand at 749.199 kb on - strand, within HEPCGN_04265 at 749.199 kb on - strand, within HEPCGN_04265 at 749.321 kb on - strand, within HEPCGN_04265 at 749.438 kb on + strand, within HEPCGN_04265 at 749.502 kb on + strand, within HEPCGN_04265 at 749.642 kb on - strand, within HEPCGN_04265 at 749.769 kb on + strand at 749.769 kb on + strand at 750.151 kb on + strand at 750.712 kb on - strand at 750.826 kb on - strand, within HEPCGN_04280 at 750.826 kb on - strand, within HEPCGN_04280 at 750.959 kb on - strand, within HEPCGN_04280 at 751.098 kb on + strand, within HEPCGN_04280
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 748,850 - -1.6 748,919 + -0.4 749,199 - HEPCGN_04265 0.39 -0.1 749,199 - HEPCGN_04265 0.39 +0.6 749,321 - HEPCGN_04265 0.53 +0.4 749,438 + HEPCGN_04265 0.66 -0.5 749,502 + HEPCGN_04265 0.73 -0.1 749,642 - HEPCGN_04265 0.89 +0.6 749,769 + +0.5 749,769 + -0.7 750,151 + +0.4 750,712 - +0.9 750,826 - HEPCGN_04280 0.24 +0.1 750,826 - HEPCGN_04280 0.24 +0.2 750,959 - HEPCGN_04280 0.44 +0.6 751,098 + HEPCGN_04280 0.66 -0.7
Or see this region's nucleotide sequence