Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nrfB and cusS are separated by 149 nucleotides cusS and cusR overlap by 11 nucleotides cusR and ibeB are separated by 156 nucleotides
HEPCGN_00575: nrfB - phage adsorption protein NrfB, at 38,022 to 39,965
nrfB
HEPCGN_00580: cusS - Cu(+)/Ag(+) sensor histidine kinase CusS, at 40,115 to 41,557
cusS
HEPCGN_00585: cusR - copper response regulator transcription factor CusR, at 41,547 to 42,230
cusR
HEPCGN_00590: ibeB - Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC, at 42,387 to 43,769
ibeB
Position (kb) 40
41
42 Strain fitness (log2 ratio) -2
-1
0
1
2 at 39.377 kb on - strand, within nrfB at 39.377 kb on - strand, within nrfB at 39.416 kb on - strand, within nrfB at 39.423 kb on + strand, within nrfB at 39.424 kb on - strand, within nrfB at 39.576 kb on + strand, within nrfB at 39.576 kb on + strand, within nrfB at 39.582 kb on - strand, within nrfB at 39.662 kb on + strand, within nrfB at 39.830 kb on + strand at 39.916 kb on - strand at 39.938 kb on + strand at 39.998 kb on - strand at 40.010 kb on - strand at 40.049 kb on - strand at 40.051 kb on + strand at 40.051 kb on + strand at 40.052 kb on - strand at 40.052 kb on - strand at 40.052 kb on - strand at 40.052 kb on - strand at 40.062 kb on - strand at 40.092 kb on - strand at 40.092 kb on - strand at 40.180 kb on + strand at 40.287 kb on - strand, within cusS at 40.287 kb on - strand, within cusS at 40.287 kb on - strand, within cusS at 40.387 kb on + strand, within cusS at 40.387 kb on + strand, within cusS at 40.607 kb on - strand, within cusS at 40.607 kb on - strand, within cusS at 40.649 kb on - strand, within cusS at 40.726 kb on + strand, within cusS at 40.727 kb on - strand, within cusS at 40.796 kb on - strand, within cusS at 40.808 kb on - strand, within cusS at 40.808 kb on - strand, within cusS at 40.808 kb on - strand, within cusS at 40.888 kb on + strand, within cusS at 40.889 kb on - strand, within cusS at 40.936 kb on + strand, within cusS at 40.936 kb on + strand, within cusS at 40.937 kb on - strand, within cusS at 40.937 kb on - strand, within cusS at 40.994 kb on - strand, within cusS at 41.018 kb on - strand, within cusS at 41.022 kb on + strand, within cusS at 41.022 kb on + strand, within cusS at 41.022 kb on + strand, within cusS at 41.023 kb on - strand, within cusS at 41.023 kb on - strand, within cusS at 41.056 kb on - strand, within cusS at 41.062 kb on + strand, within cusS at 41.062 kb on + strand, within cusS at 41.063 kb on - strand, within cusS at 41.064 kb on + strand, within cusS at 41.064 kb on + strand, within cusS at 41.104 kb on + strand, within cusS at 41.105 kb on - strand, within cusS at 41.131 kb on + strand, within cusS at 41.158 kb on + strand, within cusS at 41.181 kb on + strand, within cusS at 41.227 kb on + strand, within cusS at 41.262 kb on + strand, within cusS at 41.262 kb on + strand, within cusS at 41.263 kb on - strand, within cusS at 41.272 kb on + strand, within cusS at 41.324 kb on - strand, within cusS at 41.371 kb on + strand, within cusS at 41.371 kb on + strand, within cusS at 41.372 kb on - strand, within cusS at 41.416 kb on + strand at 41.417 kb on - strand at 41.575 kb on + strand at 41.763 kb on - strand, within cusR at 41.996 kb on + strand, within cusR at 42.020 kb on + strand, within cusR at 42.074 kb on + strand, within cusR at 42.074 kb on + strand, within cusR at 42.075 kb on - strand, within cusR at 42.075 kb on - strand, within cusR at 42.097 kb on + strand, within cusR at 42.098 kb on - strand, within cusR at 42.122 kb on - strand, within cusR at 42.260 kb on + strand at 42.532 kb on - strand, within ibeB
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 39,377 - nrfB HEPCGN_00575 0.70 -1.4 39,377 - nrfB HEPCGN_00575 0.70 -0.9 39,416 - nrfB HEPCGN_00575 0.72 +0.7 39,423 + nrfB HEPCGN_00575 0.72 -1.7 39,424 - nrfB HEPCGN_00575 0.72 +0.3 39,576 + nrfB HEPCGN_00575 0.80 -0.5 39,576 + nrfB HEPCGN_00575 0.80 +1.0 39,582 - nrfB HEPCGN_00575 0.80 +1.0 39,662 + nrfB HEPCGN_00575 0.84 -0.7 39,830 + +0.2 39,916 - +0.8 39,938 + -0.4 39,998 - +1.0 40,010 - -0.4 40,049 - -2.1 40,051 + +1.0 40,051 + +1.8 40,052 - +1.0 40,052 - +0.2 40,052 - +0.1 40,052 - +0.3 40,062 - -0.1 40,092 - -0.1 40,092 - +1.2 40,180 + -0.8 40,287 - cusS HEPCGN_00580 0.12 -0.5 40,287 - cusS HEPCGN_00580 0.12 +0.4 40,287 - cusS HEPCGN_00580 0.12 +0.3 40,387 + cusS HEPCGN_00580 0.19 -0.0 40,387 + cusS HEPCGN_00580 0.19 -0.1 40,607 - cusS HEPCGN_00580 0.34 +0.6 40,607 - cusS HEPCGN_00580 0.34 +0.9 40,649 - cusS HEPCGN_00580 0.37 -0.0 40,726 + cusS HEPCGN_00580 0.42 -0.3 40,727 - cusS HEPCGN_00580 0.42 -0.0 40,796 - cusS HEPCGN_00580 0.47 +0.5 40,808 - cusS HEPCGN_00580 0.48 -0.8 40,808 - cusS HEPCGN_00580 0.48 -0.1 40,808 - cusS HEPCGN_00580 0.48 -1.8 40,888 + cusS HEPCGN_00580 0.54 -1.9 40,889 - cusS HEPCGN_00580 0.54 -0.6 40,936 + cusS HEPCGN_00580 0.57 -0.0 40,936 + cusS HEPCGN_00580 0.57 +0.2 40,937 - cusS HEPCGN_00580 0.57 +0.2 40,937 - cusS HEPCGN_00580 0.57 -0.6 40,994 - cusS HEPCGN_00580 0.61 -0.1 41,018 - cusS HEPCGN_00580 0.63 +0.2 41,022 + cusS HEPCGN_00580 0.63 -0.1 41,022 + cusS HEPCGN_00580 0.63 -0.3 41,022 + cusS HEPCGN_00580 0.63 +0.8 41,023 - cusS HEPCGN_00580 0.63 +0.3 41,023 - cusS HEPCGN_00580 0.63 -0.8 41,056 - cusS HEPCGN_00580 0.65 +0.0 41,062 + cusS HEPCGN_00580 0.66 -0.1 41,062 + cusS HEPCGN_00580 0.66 +0.1 41,063 - cusS HEPCGN_00580 0.66 +0.6 41,064 + cusS HEPCGN_00580 0.66 +0.3 41,064 + cusS HEPCGN_00580 0.66 -0.2 41,104 + cusS HEPCGN_00580 0.69 +0.4 41,105 - cusS HEPCGN_00580 0.69 +0.4 41,131 + cusS HEPCGN_00580 0.70 +0.6 41,158 + cusS HEPCGN_00580 0.72 -1.0 41,181 + cusS HEPCGN_00580 0.74 +0.3 41,227 + cusS HEPCGN_00580 0.77 -2.0 41,262 + cusS HEPCGN_00580 0.79 -0.4 41,262 + cusS HEPCGN_00580 0.79 -0.6 41,263 - cusS HEPCGN_00580 0.80 +0.0 41,272 + cusS HEPCGN_00580 0.80 +0.0 41,324 - cusS HEPCGN_00580 0.84 -0.3 41,371 + cusS HEPCGN_00580 0.87 +0.3 41,371 + cusS HEPCGN_00580 0.87 -0.8 41,372 - cusS HEPCGN_00580 0.87 +0.3 41,416 + +0.1 41,417 - -1.5 41,575 + +0.2 41,763 - cusR HEPCGN_00585 0.32 -1.6 41,996 + cusR HEPCGN_00585 0.66 -1.0 42,020 + cusR HEPCGN_00585 0.69 -0.0 42,074 + cusR HEPCGN_00585 0.77 +0.8 42,074 + cusR HEPCGN_00585 0.77 -0.2 42,075 - cusR HEPCGN_00585 0.77 +0.4 42,075 - cusR HEPCGN_00585 0.77 +0.4 42,097 + cusR HEPCGN_00585 0.80 +0.3 42,098 - cusR HEPCGN_00585 0.81 -0.8 42,122 - cusR HEPCGN_00585 0.84 +0.6 42,260 + -0.6 42,532 - ibeB HEPCGN_00590 0.10 -0.5
Or see this region's nucleotide sequence