Strain Fitness in Escherichia coli ECOR38 around HEPCGN_27450

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_27440 and HEPCGN_27445 are separated by 168 nucleotidesHEPCGN_27445 and HEPCGN_27450 are separated by 7 nucleotidesHEPCGN_27450 and HEPCGN_27455 are separated by 235 nucleotidesHEPCGN_27455 and HEPCGN_27460 overlap by 42 nucleotides HEPCGN_27440: HEPCGN_27440 - TonB-dependent receptor, at 53,049 to 55,310 _27440 HEPCGN_27445: HEPCGN_27445 - energy transducer TonB, at 55,479 to 56,255 _27445 HEPCGN_27450: HEPCGN_27450 - iron-regulated protein, at 56,263 to 57,138 _27450 HEPCGN_27455: HEPCGN_27455 - hypothetical protein, at 57,374 to 57,511 _27455 HEPCGN_27460: HEPCGN_27460 - PriCT-1 domain-containing protein, at 57,470 to 58,036 _27460 Position (kb) 56 57 58Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 55.273 kb on - strandat 55.275 kb on + strandat 55.374 kb on - strandat 55.493 kb on + strandat 55.513 kb on - strandat 55.586 kb on + strand, within HEPCGN_27445at 55.586 kb on + strand, within HEPCGN_27445at 55.586 kb on + strand, within HEPCGN_27445at 55.587 kb on - strand, within HEPCGN_27445at 55.587 kb on - strand, within HEPCGN_27445at 55.587 kb on - strand, within HEPCGN_27445at 55.665 kb on - strand, within HEPCGN_27445at 55.724 kb on + strand, within HEPCGN_27445at 55.725 kb on - strand, within HEPCGN_27445at 55.725 kb on - strand, within HEPCGN_27445at 55.726 kb on + strand, within HEPCGN_27445at 55.746 kb on + strand, within HEPCGN_27445at 55.747 kb on - strand, within HEPCGN_27445at 55.850 kb on + strand, within HEPCGN_27445at 55.894 kb on - strand, within HEPCGN_27445at 55.894 kb on - strand, within HEPCGN_27445at 55.894 kb on - strand, within HEPCGN_27445at 55.894 kb on - strand, within HEPCGN_27445at 55.898 kb on + strand, within HEPCGN_27445at 55.898 kb on + strand, within HEPCGN_27445at 55.949 kb on + strand, within HEPCGN_27445at 55.950 kb on - strand, within HEPCGN_27445at 55.953 kb on + strand, within HEPCGN_27445at 55.954 kb on - strand, within HEPCGN_27445at 55.954 kb on - strand, within HEPCGN_27445at 55.954 kb on - strand, within HEPCGN_27445at 55.954 kb on - strand, within HEPCGN_27445at 56.089 kb on - strand, within HEPCGN_27445at 56.089 kb on - strand, within HEPCGN_27445at 56.090 kb on + strand, within HEPCGN_27445at 56.132 kb on + strand, within HEPCGN_27445at 56.133 kb on - strand, within HEPCGN_27445at 56.133 kb on - strand, within HEPCGN_27445at 56.133 kb on - strand, within HEPCGN_27445at 56.163 kb on - strand, within HEPCGN_27445at 56.204 kb on + strandat 56.205 kb on - strandat 56.223 kb on + strandat 56.247 kb on - strandat 56.247 kb on - strandat 56.277 kb on + strandat 56.301 kb on - strandat 56.389 kb on + strand, within HEPCGN_27450at 56.390 kb on - strand, within HEPCGN_27450at 56.477 kb on + strand, within HEPCGN_27450at 56.477 kb on + strand, within HEPCGN_27450at 56.499 kb on + strand, within HEPCGN_27450at 56.499 kb on + strand, within HEPCGN_27450at 56.547 kb on + strand, within HEPCGN_27450at 56.547 kb on + strand, within HEPCGN_27450at 56.547 kb on + strand, within HEPCGN_27450at 56.548 kb on - strand, within HEPCGN_27450at 56.548 kb on - strand, within HEPCGN_27450at 56.548 kb on - strand, within HEPCGN_27450at 56.548 kb on - strand, within HEPCGN_27450at 56.548 kb on - strand, within HEPCGN_27450at 56.548 kb on - strand, within HEPCGN_27450at 56.548 kb on - strand, within HEPCGN_27450at 56.548 kb on - strand, within HEPCGN_27450at 56.551 kb on + strand, within HEPCGN_27450at 56.551 kb on + strand, within HEPCGN_27450at 56.551 kb on + strand, within HEPCGN_27450at 56.551 kb on + strand, within HEPCGN_27450at 56.551 kb on + strand, within HEPCGN_27450at 56.551 kb on + strand, within HEPCGN_27450at 56.551 kb on + strand, within HEPCGN_27450at 56.551 kb on + strand, within HEPCGN_27450at 56.552 kb on - strand, within HEPCGN_27450at 56.552 kb on - strand, within HEPCGN_27450at 56.552 kb on - strand, within HEPCGN_27450at 56.552 kb on - strand, within HEPCGN_27450at 56.552 kb on - strand, within HEPCGN_27450at 56.628 kb on - strand, within HEPCGN_27450at 56.638 kb on + strand, within HEPCGN_27450at 56.686 kb on + strand, within HEPCGN_27450at 56.686 kb on + strand, within HEPCGN_27450at 56.686 kb on + strand, within HEPCGN_27450at 56.687 kb on - strand, within HEPCGN_27450at 56.687 kb on - strand, within HEPCGN_27450at 56.689 kb on + strand, within HEPCGN_27450at 56.689 kb on + strand, within HEPCGN_27450at 56.689 kb on + strand, within HEPCGN_27450at 56.689 kb on + strand, within HEPCGN_27450at 56.689 kb on + strand, within HEPCGN_27450at 56.690 kb on - strand, within HEPCGN_27450at 56.690 kb on - strand, within HEPCGN_27450at 56.690 kb on - strand, within HEPCGN_27450at 56.711 kb on + strand, within HEPCGN_27450at 56.711 kb on + strand, within HEPCGN_27450at 56.711 kb on + strand, within HEPCGN_27450at 56.711 kb on + strand, within HEPCGN_27450at 56.711 kb on + strand, within HEPCGN_27450at 56.712 kb on - strand, within HEPCGN_27450at 56.712 kb on - strand, within HEPCGN_27450at 56.712 kb on - strand, within HEPCGN_27450at 56.712 kb on - strand, within HEPCGN_27450at 56.742 kb on + strand, within HEPCGN_27450at 56.742 kb on + strand, within HEPCGN_27450at 56.742 kb on + strand, within HEPCGN_27450at 56.743 kb on - strand, within HEPCGN_27450at 56.743 kb on - strand, within HEPCGN_27450at 56.743 kb on - strand, within HEPCGN_27450at 56.743 kb on - strand, within HEPCGN_27450at 56.743 kb on - strand, within HEPCGN_27450at 56.743 kb on - strand, within HEPCGN_27450at 56.746 kb on + strand, within HEPCGN_27450at 56.746 kb on + strand, within HEPCGN_27450at 56.746 kb on + strand, within HEPCGN_27450at 56.747 kb on - strand, within HEPCGN_27450at 56.763 kb on + strand, within HEPCGN_27450at 56.764 kb on - strand, within HEPCGN_27450at 56.764 kb on - strand, within HEPCGN_27450at 56.764 kb on - strand, within HEPCGN_27450at 56.781 kb on + strand, within HEPCGN_27450at 56.781 kb on + strand, within HEPCGN_27450at 56.799 kb on + strand, within HEPCGN_27450at 56.886 kb on + strand, within HEPCGN_27450at 56.919 kb on + strand, within HEPCGN_27450at 56.937 kb on + strand, within HEPCGN_27450at 56.940 kb on + strand, within HEPCGN_27450at 56.940 kb on + strand, within HEPCGN_27450at 56.940 kb on + strand, within HEPCGN_27450at 56.940 kb on + strand, within HEPCGN_27450at 56.940 kb on + strand, within HEPCGN_27450at 56.941 kb on - strand, within HEPCGN_27450at 56.988 kb on + strand, within HEPCGN_27450at 57.011 kb on + strand, within HEPCGN_27450at 57.011 kb on + strand, within HEPCGN_27450at 57.062 kb on - strandat 57.062 kb on - strandat 57.093 kb on + strandat 57.093 kb on + strandat 57.094 kb on - strandat 57.099 kb on + strandat 57.099 kb on + strandat 57.100 kb on - strandat 57.100 kb on - strandat 57.100 kb on - strandat 57.100 kb on - strandat 57.103 kb on + strandat 57.103 kb on + strandat 57.104 kb on - strandat 57.104 kb on - strandat 57.104 kb on - strandat 57.104 kb on - strandat 57.115 kb on - strandat 57.120 kb on + strandat 57.121 kb on - strandat 57.138 kb on + strandat 57.138 kb on + strandat 57.139 kb on - strandat 57.156 kb on + strandat 57.186 kb on + strandat 57.250 kb on + strandat 57.265 kb on - strandat 57.275 kb on - strandat 57.277 kb on + strandat 57.302 kb on + strandat 57.302 kb on + strandat 57.302 kb on + strandat 57.303 kb on - strandat 57.303 kb on - strandat 57.303 kb on - strandat 57.303 kb on - strandat 57.303 kb on - strandat 57.303 kb on - strandat 57.341 kb on - strandat 57.341 kb on - strandat 57.361 kb on - strandat 57.417 kb on + strand, within HEPCGN_27455at 57.417 kb on + strand, within HEPCGN_27455at 57.417 kb on + strand, within HEPCGN_27455at 57.417 kb on + strand, within HEPCGN_27455at 57.417 kb on + strand, within HEPCGN_27455at 57.417 kb on + strand, within HEPCGN_27455at 57.417 kb on + strand, within HEPCGN_27455at 57.417 kb on + strand, within HEPCGN_27455at 57.417 kb on + strand, within HEPCGN_27455at 57.417 kb on + strand, within HEPCGN_27455at 57.417 kb on + strand, within HEPCGN_27455at 57.417 kb on + strand, within HEPCGN_27455at 57.418 kb on - strand, within HEPCGN_27455at 57.418 kb on - strand, within HEPCGN_27455at 57.418 kb on - strand, within HEPCGN_27455at 57.418 kb on - strand, within HEPCGN_27455at 57.418 kb on - strand, within HEPCGN_27455at 57.450 kb on - strand, within HEPCGN_27455at 57.459 kb on + strand, within HEPCGN_27455at 57.504 kb on + strandat 57.505 kb on - strandat 57.505 kb on - strandat 57.510 kb on - strandat 57.521 kb on - strandat 57.532 kb on - strand, within HEPCGN_27460at 57.532 kb on - strand, within HEPCGN_27460at 57.532 kb on - strand, within HEPCGN_27460at 57.532 kb on - strand, within HEPCGN_27460at 57.532 kb on - strand, within HEPCGN_27460at 57.532 kb on - strand, within HEPCGN_27460at 57.639 kb on + strand, within HEPCGN_27460at 57.640 kb on - strand, within HEPCGN_27460at 57.640 kb on - strand, within HEPCGN_27460at 57.640 kb on - strand, within HEPCGN_27460at 57.769 kb on + strand, within HEPCGN_27460at 57.831 kb on + strand, within HEPCGN_27460at 57.831 kb on + strand, within HEPCGN_27460at 57.900 kb on + strand, within HEPCGN_27460at 57.900 kb on + strand, within HEPCGN_27460at 57.901 kb on - strand, within HEPCGN_27460at 57.901 kb on - strand, within HEPCGN_27460at 57.954 kb on + strand, within HEPCGN_27460at 57.955 kb on - strand, within HEPCGN_27460at 58.012 kb on - strandat 58.012 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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55,273 - +0.3
55,275 + +0.6
55,374 - +0.1
55,493 + -0.2
55,513 - +0.3
55,586 + HEPCGN_27445 0.14 -0.4
55,586 + HEPCGN_27445 0.14 +2.3
55,586 + HEPCGN_27445 0.14 -0.1
55,587 - HEPCGN_27445 0.14 +0.8
55,587 - HEPCGN_27445 0.14 -1.0
55,587 - HEPCGN_27445 0.14 +0.0
55,665 - HEPCGN_27445 0.24 -0.8
55,724 + HEPCGN_27445 0.32 +0.3
55,725 - HEPCGN_27445 0.32 -0.6
55,725 - HEPCGN_27445 0.32 -2.7
55,726 + HEPCGN_27445 0.32 +0.1
55,746 + HEPCGN_27445 0.34 -0.2
55,747 - HEPCGN_27445 0.34 -1.3
55,850 + HEPCGN_27445 0.48 +0.0
55,894 - HEPCGN_27445 0.53 +0.6
55,894 - HEPCGN_27445 0.53 +0.4
55,894 - HEPCGN_27445 0.53 -0.7
55,894 - HEPCGN_27445 0.53 -1.7
55,898 + HEPCGN_27445 0.54 -0.2
55,898 + HEPCGN_27445 0.54 +2.6
55,949 + HEPCGN_27445 0.60 -0.5
55,950 - HEPCGN_27445 0.61 -0.7
55,953 + HEPCGN_27445 0.61 -1.4
55,954 - HEPCGN_27445 0.61 +1.6
55,954 - HEPCGN_27445 0.61 +0.2
55,954 - HEPCGN_27445 0.61 +0.6
55,954 - HEPCGN_27445 0.61 +0.2
56,089 - HEPCGN_27445 0.79 +1.3
56,089 - HEPCGN_27445 0.79 +0.6
56,090 + HEPCGN_27445 0.79 -0.7
56,132 + HEPCGN_27445 0.84 -0.1
56,133 - HEPCGN_27445 0.84 -0.3
56,133 - HEPCGN_27445 0.84 +0.3
56,133 - HEPCGN_27445 0.84 +1.3
56,163 - HEPCGN_27445 0.88 -1.0
56,204 + -0.2
56,205 - +1.1
56,223 + -0.1
56,247 - -0.1
56,247 - +0.5
56,277 + +0.4
56,301 - +1.4
56,389 + HEPCGN_27450 0.14 +0.8
56,390 - HEPCGN_27450 0.14 +2.0
56,477 + HEPCGN_27450 0.24 +0.2
56,477 + HEPCGN_27450 0.24 +1.2
56,499 + HEPCGN_27450 0.27 -1.0
56,499 + HEPCGN_27450 0.27 -0.9
56,547 + HEPCGN_27450 0.32 -0.4
56,547 + HEPCGN_27450 0.32 -0.9
56,547 + HEPCGN_27450 0.32 -1.4
56,548 - HEPCGN_27450 0.33 -2.3
56,548 - HEPCGN_27450 0.33 -1.5
56,548 - HEPCGN_27450 0.33 +0.1
56,548 - HEPCGN_27450 0.33 -1.3
56,548 - HEPCGN_27450 0.33 +0.2
56,548 - HEPCGN_27450 0.33 +1.7
56,548 - HEPCGN_27450 0.33 +1.0
56,548 - HEPCGN_27450 0.33 -1.2
56,551 + HEPCGN_27450 0.33 +0.3
56,551 + HEPCGN_27450 0.33 +1.2
56,551 + HEPCGN_27450 0.33 -0.4
56,551 + HEPCGN_27450 0.33 +1.1
56,551 + HEPCGN_27450 0.33 -1.7
56,551 + HEPCGN_27450 0.33 +0.6
56,551 + HEPCGN_27450 0.33 +0.2
56,551 + HEPCGN_27450 0.33 -0.9
56,552 - HEPCGN_27450 0.33 +0.6
56,552 - HEPCGN_27450 0.33 +0.9
56,552 - HEPCGN_27450 0.33 +0.7
56,552 - HEPCGN_27450 0.33 -0.5
56,552 - HEPCGN_27450 0.33 +0.2
56,628 - HEPCGN_27450 0.42 -0.0
56,638 + HEPCGN_27450 0.43 -0.4
56,686 + HEPCGN_27450 0.48 -1.1
56,686 + HEPCGN_27450 0.48 +0.7
56,686 + HEPCGN_27450 0.48 -0.1
56,687 - HEPCGN_27450 0.48 -0.9
56,687 - HEPCGN_27450 0.48 +1.1
56,689 + HEPCGN_27450 0.49 +0.7
56,689 + HEPCGN_27450 0.49 +1.1
56,689 + HEPCGN_27450 0.49 +0.0
56,689 + HEPCGN_27450 0.49 +0.1
56,689 + HEPCGN_27450 0.49 -0.8
56,690 - HEPCGN_27450 0.49 -0.5
56,690 - HEPCGN_27450 0.49 +2.2
56,690 - HEPCGN_27450 0.49 +0.6
56,711 + HEPCGN_27450 0.51 -0.1
56,711 + HEPCGN_27450 0.51 -0.4
56,711 + HEPCGN_27450 0.51 +0.4
56,711 + HEPCGN_27450 0.51 +1.0
56,711 + HEPCGN_27450 0.51 -3.4
56,712 - HEPCGN_27450 0.51 -0.4
56,712 - HEPCGN_27450 0.51 +0.7
56,712 - HEPCGN_27450 0.51 -0.2
56,712 - HEPCGN_27450 0.51 +0.5
56,742 + HEPCGN_27450 0.55 -0.2
56,742 + HEPCGN_27450 0.55 +1.9
56,742 + HEPCGN_27450 0.55 -0.1
56,743 - HEPCGN_27450 0.55 +0.2
56,743 - HEPCGN_27450 0.55 -0.6
56,743 - HEPCGN_27450 0.55 -0.9
56,743 - HEPCGN_27450 0.55 +0.2
56,743 - HEPCGN_27450 0.55 -2.1
56,743 - HEPCGN_27450 0.55 -0.4
56,746 + HEPCGN_27450 0.55 +0.5
56,746 + HEPCGN_27450 0.55 +0.1
56,746 + HEPCGN_27450 0.55 +0.4
56,747 - HEPCGN_27450 0.55 +0.1
56,763 + HEPCGN_27450 0.57 -0.0
56,764 - HEPCGN_27450 0.57 +0.6
56,764 - HEPCGN_27450 0.57 +0.4
56,764 - HEPCGN_27450 0.57 +0.2
56,781 + HEPCGN_27450 0.59 +1.0
56,781 + HEPCGN_27450 0.59 +2.0
56,799 + HEPCGN_27450 0.61 +1.2
56,886 + HEPCGN_27450 0.71 -1.7
56,919 + HEPCGN_27450 0.75 +0.4
56,937 + HEPCGN_27450 0.77 -0.4
56,940 + HEPCGN_27450 0.77 -0.2
56,940 + HEPCGN_27450 0.77 -0.1
56,940 + HEPCGN_27450 0.77 -2.2
56,940 + HEPCGN_27450 0.77 +1.0
56,940 + HEPCGN_27450 0.77 +1.0
56,941 - HEPCGN_27450 0.77 -0.2
56,988 + HEPCGN_27450 0.83 -0.5
57,011 + HEPCGN_27450 0.85 +3.7
57,011 + HEPCGN_27450 0.85 -2.0
57,062 - +0.3
57,062 - -1.0
57,093 + +1.8
57,093 + +0.4
57,094 - -0.8
57,099 + -0.8
57,099 + +0.6
57,100 - +0.9
57,100 - -0.3
57,100 - +0.1
57,100 - +1.0
57,103 + -1.1
57,103 + +1.3
57,104 - +1.6
57,104 - -1.3
57,104 - +2.1
57,104 - +0.9
57,115 - +0.5
57,120 + +0.2
57,121 - +0.8
57,138 + +0.5
57,138 + +1.1
57,139 - -2.3
57,156 + -3.7
57,186 + -0.8
57,250 + -0.9
57,265 - -1.2
57,275 - -0.4
57,277 + +0.1
57,302 + -0.2
57,302 + +1.6
57,302 + +0.2
57,303 - -0.3
57,303 - +0.4
57,303 - -2.0
57,303 - -1.3
57,303 - -2.0
57,303 - -2.6
57,341 - +1.2
57,341 - +0.8
57,361 - +0.6
57,417 + HEPCGN_27455 0.31 -1.2
57,417 + HEPCGN_27455 0.31 +2.2
57,417 + HEPCGN_27455 0.31 +1.5
57,417 + HEPCGN_27455 0.31 +0.0
57,417 + HEPCGN_27455 0.31 -1.1
57,417 + HEPCGN_27455 0.31 +3.2
57,417 + HEPCGN_27455 0.31 +0.4
57,417 + HEPCGN_27455 0.31 -0.1
57,417 + HEPCGN_27455 0.31 +0.9
57,417 + HEPCGN_27455 0.31 +0.4
57,417 + HEPCGN_27455 0.31 -0.5
57,417 + HEPCGN_27455 0.31 +1.6
57,418 - HEPCGN_27455 0.32 +1.0
57,418 - HEPCGN_27455 0.32 +1.6
57,418 - HEPCGN_27455 0.32 -1.7
57,418 - HEPCGN_27455 0.32 +1.0
57,418 - HEPCGN_27455 0.32 +0.8
57,450 - HEPCGN_27455 0.55 +3.8
57,459 + HEPCGN_27455 0.62 +0.3
57,504 + +0.9
57,505 - -1.0
57,505 - +0.4
57,510 - +0.4
57,521 - -1.4
57,532 - HEPCGN_27460 0.11 +1.1
57,532 - HEPCGN_27460 0.11 -0.3
57,532 - HEPCGN_27460 0.11 +1.6
57,532 - HEPCGN_27460 0.11 +0.7
57,532 - HEPCGN_27460 0.11 +0.9
57,532 - HEPCGN_27460 0.11 -0.7
57,639 + HEPCGN_27460 0.30 +2.0
57,640 - HEPCGN_27460 0.30 -0.2
57,640 - HEPCGN_27460 0.30 -1.3
57,640 - HEPCGN_27460 0.30 +0.0
57,769 + HEPCGN_27460 0.53 +2.6
57,831 + HEPCGN_27460 0.64 -1.6
57,831 + HEPCGN_27460 0.64 +1.9
57,900 + HEPCGN_27460 0.76 +1.8
57,900 + HEPCGN_27460 0.76 +0.9
57,901 - HEPCGN_27460 0.76 -0.0
57,901 - HEPCGN_27460 0.76 +0.9
57,954 + HEPCGN_27460 0.85 +2.6
57,955 - HEPCGN_27460 0.86 +0.1
58,012 - -0.4
58,012 - -0.6

Or see this region's nucleotide sequence