Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ldtC and mfd are separated by 145 nucleotides mfd and ycfT are separated by 79 nucleotides
HEPCGN_24010: ldtC - L,D-transpeptidase LdtC, at 3,587,442 to 3,588,401
ldtC
HEPCGN_24015: mfd - transcription-repair coupling factor, at 3,588,547 to 3,592,041
mfd
HEPCGN_24020: ycfT - Inner membrane protein YcfT, at 3,592,121 to 3,593,194
ycfT
Position (kb)
3588
3589
3590
3591
3592
3593 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3587.577 kb on - strand, within ldtC at 3587.577 kb on - strand, within ldtC at 3587.577 kb on - strand, within ldtC at 3587.577 kb on - strand, within ldtC at 3587.628 kb on + strand, within ldtC at 3587.629 kb on - strand, within ldtC at 3587.691 kb on + strand, within ldtC at 3587.692 kb on - strand, within ldtC at 3587.812 kb on + strand, within ldtC at 3587.910 kb on - strand, within ldtC at 3588.062 kb on - strand, within ldtC at 3588.062 kb on - strand, within ldtC at 3588.083 kb on + strand, within ldtC at 3588.083 kb on + strand, within ldtC at 3588.084 kb on - strand, within ldtC at 3588.166 kb on + strand, within ldtC at 3588.215 kb on + strand, within ldtC at 3588.265 kb on + strand, within ldtC at 3588.362 kb on + strand at 3588.362 kb on + strand at 3588.907 kb on - strand, within mfd at 3588.907 kb on - strand, within mfd at 3588.914 kb on + strand, within mfd at 3589.070 kb on + strand, within mfd at 3589.071 kb on - strand, within mfd at 3589.263 kb on - strand, within mfd at 3589.263 kb on - strand, within mfd at 3589.344 kb on + strand, within mfd at 3589.393 kb on - strand, within mfd at 3589.393 kb on - strand, within mfd at 3589.553 kb on + strand, within mfd at 3589.554 kb on - strand, within mfd at 3589.557 kb on - strand, within mfd at 3589.635 kb on + strand, within mfd at 3589.711 kb on - strand, within mfd at 3589.711 kb on - strand, within mfd at 3589.825 kb on + strand, within mfd at 3589.825 kb on + strand, within mfd at 3589.957 kb on - strand, within mfd at 3590.056 kb on + strand, within mfd at 3590.057 kb on - strand, within mfd at 3590.155 kb on - strand, within mfd at 3590.155 kb on - strand, within mfd at 3590.158 kb on + strand, within mfd at 3590.225 kb on + strand, within mfd at 3590.435 kb on + strand, within mfd at 3590.435 kb on + strand, within mfd at 3590.436 kb on - strand, within mfd at 3590.456 kb on + strand, within mfd at 3590.457 kb on - strand, within mfd at 3590.471 kb on + strand, within mfd at 3590.559 kb on + strand, within mfd at 3590.677 kb on - strand, within mfd at 3590.723 kb on + strand, within mfd at 3590.758 kb on - strand, within mfd at 3591.219 kb on - strand, within mfd at 3591.235 kb on + strand, within mfd at 3591.236 kb on - strand, within mfd at 3591.236 kb on - strand, within mfd at 3591.260 kb on + strand, within mfd at 3591.660 kb on + strand, within mfd at 3591.661 kb on - strand, within mfd at 3591.865 kb on + strand at 3591.972 kb on + strand at 3591.972 kb on + strand at 3591.981 kb on - strand at 3592.020 kb on - strand at 3592.031 kb on + strand at 3592.032 kb on - strand at 3592.032 kb on - strand at 3592.041 kb on + strand at 3592.042 kb on - strand at 3592.087 kb on + strand at 3592.131 kb on + strand at 3592.202 kb on + strand at 3592.237 kb on + strand, within ycfT at 3592.248 kb on + strand, within ycfT at 3592.317 kb on - strand, within ycfT at 3592.353 kb on + strand, within ycfT at 3592.353 kb on + strand, within ycfT at 3592.354 kb on - strand, within ycfT at 3592.354 kb on - strand, within ycfT at 3592.358 kb on - strand, within ycfT at 3592.480 kb on + strand, within ycfT at 3592.483 kb on + strand, within ycfT at 3592.483 kb on + strand, within ycfT at 3592.602 kb on + strand, within ycfT at 3592.679 kb on + strand, within ycfT at 3592.727 kb on + strand, within ycfT at 3592.745 kb on + strand, within ycfT at 3592.753 kb on - strand, within ycfT at 3592.753 kb on - strand, within ycfT at 3592.753 kb on - strand, within ycfT at 3592.881 kb on - strand, within ycfT at 3592.988 kb on + strand, within ycfT
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 3,587,577 - ldtC HEPCGN_24010 0.14 +0.6 3,587,577 - ldtC HEPCGN_24010 0.14 +0.1 3,587,577 - ldtC HEPCGN_24010 0.14 -2.7 3,587,577 - ldtC HEPCGN_24010 0.14 -1.7 3,587,628 + ldtC HEPCGN_24010 0.19 +0.6 3,587,629 - ldtC HEPCGN_24010 0.19 -0.6 3,587,691 + ldtC HEPCGN_24010 0.26 -0.6 3,587,692 - ldtC HEPCGN_24010 0.26 +0.5 3,587,812 + ldtC HEPCGN_24010 0.39 +0.4 3,587,910 - ldtC HEPCGN_24010 0.49 -1.7 3,588,062 - ldtC HEPCGN_24010 0.65 -1.1 3,588,062 - ldtC HEPCGN_24010 0.65 -3.9 3,588,083 + ldtC HEPCGN_24010 0.67 +0.5 3,588,083 + ldtC HEPCGN_24010 0.67 +1.4 3,588,084 - ldtC HEPCGN_24010 0.67 -0.2 3,588,166 + ldtC HEPCGN_24010 0.75 +0.9 3,588,215 + ldtC HEPCGN_24010 0.81 -0.1 3,588,265 + ldtC HEPCGN_24010 0.86 +0.5 3,588,362 + +0.5 3,588,362 + -1.3 3,588,907 - mfd HEPCGN_24015 0.10 -0.2 3,588,907 - mfd HEPCGN_24015 0.10 -0.2 3,588,914 + mfd HEPCGN_24015 0.11 +1.9 3,589,070 + mfd HEPCGN_24015 0.15 +0.7 3,589,071 - mfd HEPCGN_24015 0.15 +0.2 3,589,263 - mfd HEPCGN_24015 0.20 -0.1 3,589,263 - mfd HEPCGN_24015 0.20 +0.2 3,589,344 + mfd HEPCGN_24015 0.23 -0.5 3,589,393 - mfd HEPCGN_24015 0.24 +1.2 3,589,393 - mfd HEPCGN_24015 0.24 +0.7 3,589,553 + mfd HEPCGN_24015 0.29 +1.2 3,589,554 - mfd HEPCGN_24015 0.29 +0.1 3,589,557 - mfd HEPCGN_24015 0.29 -0.3 3,589,635 + mfd HEPCGN_24015 0.31 -0.6 3,589,711 - mfd HEPCGN_24015 0.33 -0.4 3,589,711 - mfd HEPCGN_24015 0.33 +1.7 3,589,825 + mfd HEPCGN_24015 0.37 -1.8 3,589,825 + mfd HEPCGN_24015 0.37 +0.2 3,589,957 - mfd HEPCGN_24015 0.40 +0.6 3,590,056 + mfd HEPCGN_24015 0.43 -0.2 3,590,057 - mfd HEPCGN_24015 0.43 +0.6 3,590,155 - mfd HEPCGN_24015 0.46 -0.9 3,590,155 - mfd HEPCGN_24015 0.46 +0.6 3,590,158 + mfd HEPCGN_24015 0.46 +0.8 3,590,225 + mfd HEPCGN_24015 0.48 -0.6 3,590,435 + mfd HEPCGN_24015 0.54 -0.1 3,590,435 + mfd HEPCGN_24015 0.54 +0.3 3,590,436 - mfd HEPCGN_24015 0.54 +1.9 3,590,456 + mfd HEPCGN_24015 0.55 +0.0 3,590,457 - mfd HEPCGN_24015 0.55 -0.2 3,590,471 + mfd HEPCGN_24015 0.55 -1.7 3,590,559 + mfd HEPCGN_24015 0.58 -0.0 3,590,677 - mfd HEPCGN_24015 0.61 -0.0 3,590,723 + mfd HEPCGN_24015 0.62 +0.6 3,590,758 - mfd HEPCGN_24015 0.63 +0.5 3,591,219 - mfd HEPCGN_24015 0.76 -0.1 3,591,235 + mfd HEPCGN_24015 0.77 -0.5 3,591,236 - mfd HEPCGN_24015 0.77 -1.8 3,591,236 - mfd HEPCGN_24015 0.77 -1.2 3,591,260 + mfd HEPCGN_24015 0.78 +0.9 3,591,660 + mfd HEPCGN_24015 0.89 -1.4 3,591,661 - mfd HEPCGN_24015 0.89 +0.1 3,591,865 + -1.1 3,591,972 + +0.4 3,591,972 + +0.3 3,591,981 - +1.1 3,592,020 - +0.2 3,592,031 + -0.5 3,592,032 - +0.3 3,592,032 - -0.3 3,592,041 + -0.0 3,592,042 - +0.3 3,592,087 + -0.7 3,592,131 + -0.0 3,592,202 + +0.6 3,592,237 + ycfT HEPCGN_24020 0.11 -0.3 3,592,248 + ycfT HEPCGN_24020 0.12 -0.4 3,592,317 - ycfT HEPCGN_24020 0.18 +0.0 3,592,353 + ycfT HEPCGN_24020 0.22 +0.6 3,592,353 + ycfT HEPCGN_24020 0.22 -0.3 3,592,354 - ycfT HEPCGN_24020 0.22 +0.4 3,592,354 - ycfT HEPCGN_24020 0.22 -0.2 3,592,358 - ycfT HEPCGN_24020 0.22 -0.1 3,592,480 + ycfT HEPCGN_24020 0.33 +0.1 3,592,483 + ycfT HEPCGN_24020 0.34 +0.4 3,592,483 + ycfT HEPCGN_24020 0.34 +0.9 3,592,602 + ycfT HEPCGN_24020 0.45 +1.2 3,592,679 + ycfT HEPCGN_24020 0.52 +2.1 3,592,727 + ycfT HEPCGN_24020 0.56 -1.8 3,592,745 + ycfT HEPCGN_24020 0.58 +1.3 3,592,753 - ycfT HEPCGN_24020 0.59 +1.4 3,592,753 - ycfT HEPCGN_24020 0.59 -0.2 3,592,753 - ycfT HEPCGN_24020 0.59 +1.2 3,592,881 - ycfT HEPCGN_24020 0.71 +0.9 3,592,988 + ycfT HEPCGN_24020 0.81 -1.3
Or see this region's nucleotide sequence