Strain Fitness in Escherichia coli ECOR38 around HEPCGN_18665

Experiment: L-Arabinose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose
2,477,707	+	glpX	HEPCGN_18655	0.63	+0.8
2,477,708	-	glpX	HEPCGN_18655	0.63	-0.4
2,477,815	+	glpX	HEPCGN_18655	0.75	-0.0
2,477,815	+	glpX	HEPCGN_18655	0.75	+0.1
2,478,039	+				+0.2
2,478,039	+				-2.8
2,478,041	+				-1.1
2,478,041	+				-0.0
2,478,041	+				+0.7
2,478,042	-				+1.2
2,478,042	-				-0.1
2,478,045	-				-1.4
2,478,045	-				+0.7
2,478,070	-				-0.4
2,478,070	-				-0.3
2,478,138	-	fumE	HEPCGN_18660	0.11	-0.3
2,478,165	+	fumE	HEPCGN_18660	0.16	+0.2
2,478,236	-	fumE	HEPCGN_18660	0.30	-0.7
2,478,324	+	fumE	HEPCGN_18660	0.47	-1.0
2,478,441	+	fumE	HEPCGN_18660	0.70	-0.7
2,478,442	-	fumE	HEPCGN_18660	0.71	+0.1
2,478,444	+	fumE	HEPCGN_18660	0.71	-0.6
2,478,445	-	fumE	HEPCGN_18660	0.71	+0.1
2,478,467	-	fumE	HEPCGN_18660	0.75	-0.1
2,478,573	-				-2.0
2,478,622	+				-0.7
2,478,622	+				-0.6
2,478,622	+				-0.9
2,478,622	+				-1.0
2,478,623	-				+0.9
2,478,634	-				+0.0
2,478,659	-				-1.5
2,478,781	-	coaA	HEPCGN_18665	0.27	-0.3
2,478,782	+	coaA	HEPCGN_18665	0.27	-0.5
2,478,846	+	coaA	HEPCGN_18665	0.36	+0.0
2,478,846	+	coaA	HEPCGN_18665	0.36	+0.5
2,478,847	-	coaA	HEPCGN_18665	0.36	+0.1
2,478,851	+	coaA	HEPCGN_18665	0.37	+0.3
2,478,851	+	coaA	HEPCGN_18665	0.37	+0.3
2,478,852	-	coaA	HEPCGN_18665	0.37	+1.0
2,478,852	-	coaA	HEPCGN_18665	0.37	-0.3
2,478,852	-	coaA	HEPCGN_18665	0.37	-0.4
2,478,852	-	coaA	HEPCGN_18665	0.37	-1.6
2,478,956	+	coaA	HEPCGN_18665	0.52	+0.6
2,478,956	+	coaA	HEPCGN_18665	0.52	+0.4
2,478,969	+	coaA	HEPCGN_18665	0.53	-0.6
2,479,261	+				+0.5
2,479,299	+				-0.5
2,479,313	-				-0.9
2,479,536	+	cysA	HEPCGN_18670	0.39	+0.4
2,479,602	+	cysA	HEPCGN_18670	0.49	+0.3
2,479,602	+	cysA	HEPCGN_18670	0.49	-0.2
2,479,791	+	cysA	HEPCGN_18670	0.76	+1.6
2,479,925	+				-1.4
2,479,996	+				+0.1
2,480,067	+	ecfA2	HEPCGN_18675	0.18	-0.9
2,480,068	-	ecfA2	HEPCGN_18675	0.18	+1.0
2,480,068	-	ecfA2	HEPCGN_18675	0.18	-3.1