Strain Fitness in Escherichia coli ECOR38 around HEPCGN_04585

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcheY and cheZ are separated by 10 nucleotidescheZ and flhB are separated by 208 nucleotidesflhB and flhA overlap by 8 nucleotides HEPCGN_04575: cheY - chemotaxis regulatory protein CheY, at 796,352 to 796,741 cheY HEPCGN_04580: cheZ - protein phosphatase CheZ, at 796,752 to 797,396 cheZ HEPCGN_04585: flhB - flagellar biosynthesis protein FlhB, at 797,605 to 798,753 flhB HEPCGN_04590: flhA - flagellar biosynthesis protein FlhA, at 798,746 to 800,824 flhA Position (kb) 797 798 799Strain fitness (log2 ratio) -3 -2 -1 0 1at 796.667 kb on + strand, within cheYat 796.917 kb on + strand, within cheZat 796.918 kb on - strand, within cheZat 796.918 kb on - strand, within cheZat 796.918 kb on - strand, within cheZat 796.918 kb on - strand, within cheZat 796.920 kb on + strand, within cheZat 796.920 kb on + strand, within cheZat 796.921 kb on - strand, within cheZat 797.132 kb on + strand, within cheZat 797.133 kb on - strand, within cheZat 797.133 kb on - strand, within cheZat 797.401 kb on + strandat 797.514 kb on - strandat 797.574 kb on + strandat 797.575 kb on - strandat 797.581 kb on - strandat 797.584 kb on - strandat 797.584 kb on - strandat 797.737 kb on - strand, within flhBat 797.811 kb on + strand, within flhBat 797.811 kb on + strand, within flhBat 798.042 kb on + strand, within flhBat 798.526 kb on - strand, within flhBat 798.693 kb on + strandat 798.693 kb on + strandat 798.694 kb on - strandat 798.694 kb on - strandat 798.853 kb on - strandat 798.890 kb on - strandat 798.899 kb on - strandat 799.009 kb on + strand, within flhAat 799.009 kb on + strand, within flhAat 799.010 kb on - strand, within flhAat 799.222 kb on + strand, within flhAat 799.352 kb on - strand, within flhAat 799.352 kb on - strand, within flhAat 799.469 kb on + strand, within flhAat 799.471 kb on + strand, within flhAat 799.471 kb on + strand, within flhAat 799.472 kb on - strand, within flhAat 799.624 kb on - strand, within flhA

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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796,667 + cheY HEPCGN_04575 0.81 +1.0
796,917 + cheZ HEPCGN_04580 0.26 +0.2
796,918 - cheZ HEPCGN_04580 0.26 +0.6
796,918 - cheZ HEPCGN_04580 0.26 -0.2
796,918 - cheZ HEPCGN_04580 0.26 -3.0
796,918 - cheZ HEPCGN_04580 0.26 -0.9
796,920 + cheZ HEPCGN_04580 0.26 +0.6
796,920 + cheZ HEPCGN_04580 0.26 -0.0
796,921 - cheZ HEPCGN_04580 0.26 -0.0
797,132 + cheZ HEPCGN_04580 0.59 -0.1
797,133 - cheZ HEPCGN_04580 0.59 +0.8
797,133 - cheZ HEPCGN_04580 0.59 -0.2
797,401 + -0.2
797,514 - -1.1
797,574 + -0.3
797,575 - -1.5
797,581 - -1.9
797,584 - +1.0
797,584 - +0.0
797,737 - flhB HEPCGN_04585 0.11 -0.6
797,811 + flhB HEPCGN_04585 0.18 +1.4
797,811 + flhB HEPCGN_04585 0.18 -0.4
798,042 + flhB HEPCGN_04585 0.38 +0.6
798,526 - flhB HEPCGN_04585 0.80 +0.4
798,693 + -0.5
798,693 + +0.2
798,694 - -0.8
798,694 - -1.0
798,853 - +0.5
798,890 - -0.9
798,899 - -0.5
799,009 + flhA HEPCGN_04590 0.13 +0.0
799,009 + flhA HEPCGN_04590 0.13 +0.6
799,010 - flhA HEPCGN_04590 0.13 +0.3
799,222 + flhA HEPCGN_04590 0.23 +0.3
799,352 - flhA HEPCGN_04590 0.29 +0.3
799,352 - flhA HEPCGN_04590 0.29 +0.5
799,469 + flhA HEPCGN_04590 0.35 -2.3
799,471 + flhA HEPCGN_04590 0.35 +0.9
799,471 + flhA HEPCGN_04590 0.35 -0.6
799,472 - flhA HEPCGN_04590 0.35 +0.3
799,624 - flhA HEPCGN_04590 0.42 +0.4

Or see this region's nucleotide sequence