Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yehP and HEPCGN_02665 overlap by 8 nucleotides HEPCGN_02665 and yehL are separated by 10 nucleotides
HEPCGN_02660: yehP - Uncharacterized protein YehP, at 433,415 to 434,551
yehP
HEPCGN_02665: HEPCGN_02665 - DUF5682 domain-containing protein, at 434,544 to 436,823
_02665
HEPCGN_02670: yehL - Uncharacterized protein YehL, at 436,834 to 437,922
yehL
Position (kb) 434
435
436
437 Strain fitness (log2 ratio) -2
-1
0
1 at 433.740 kb on - strand, within yehP at 433.895 kb on + strand, within yehP at 433.939 kb on + strand, within yehP at 433.960 kb on - strand, within yehP at 433.960 kb on - strand, within yehP at 434.110 kb on + strand, within yehP at 434.156 kb on + strand, within yehP at 434.157 kb on - strand, within yehP at 434.157 kb on - strand, within yehP at 434.221 kb on + strand, within yehP at 434.222 kb on - strand, within yehP at 434.366 kb on + strand, within yehP at 434.366 kb on + strand, within yehP at 434.367 kb on - strand, within yehP at 434.415 kb on + strand, within yehP at 434.514 kb on - strand at 434.790 kb on + strand, within HEPCGN_02665 at 435.065 kb on + strand, within HEPCGN_02665 at 435.219 kb on - strand, within HEPCGN_02665 at 435.311 kb on + strand, within HEPCGN_02665 at 435.311 kb on + strand, within HEPCGN_02665 at 435.311 kb on + strand, within HEPCGN_02665 at 435.312 kb on - strand, within HEPCGN_02665 at 435.324 kb on + strand, within HEPCGN_02665 at 435.324 kb on + strand, within HEPCGN_02665 at 435.475 kb on - strand, within HEPCGN_02665 at 435.546 kb on - strand, within HEPCGN_02665 at 435.546 kb on - strand, within HEPCGN_02665 at 435.585 kb on + strand, within HEPCGN_02665 at 435.598 kb on - strand, within HEPCGN_02665 at 435.639 kb on + strand, within HEPCGN_02665 at 435.644 kb on + strand, within HEPCGN_02665 at 435.763 kb on - strand, within HEPCGN_02665 at 435.812 kb on - strand, within HEPCGN_02665 at 435.863 kb on + strand, within HEPCGN_02665 at 435.892 kb on - strand, within HEPCGN_02665 at 435.948 kb on - strand, within HEPCGN_02665 at 436.082 kb on - strand, within HEPCGN_02665 at 436.239 kb on + strand, within HEPCGN_02665 at 436.240 kb on - strand, within HEPCGN_02665 at 436.427 kb on + strand, within HEPCGN_02665 at 436.475 kb on + strand, within HEPCGN_02665 at 436.476 kb on - strand, within HEPCGN_02665 at 436.531 kb on + strand, within HEPCGN_02665 at 436.563 kb on + strand, within HEPCGN_02665 at 436.637 kb on - strand at 436.655 kb on + strand at 436.693 kb on - strand at 436.693 kb on - strand at 436.703 kb on + strand at 436.732 kb on + strand at 436.787 kb on + strand at 436.809 kb on + strand at 436.862 kb on + strand at 436.862 kb on + strand at 436.884 kb on + strand at 436.884 kb on + strand at 436.885 kb on - strand at 436.911 kb on - strand at 437.039 kb on - strand, within yehL at 437.065 kb on - strand, within yehL at 437.409 kb on + strand, within yehL at 437.409 kb on + strand, within yehL at 437.450 kb on - strand, within yehL at 437.549 kb on + strand, within yehL at 437.550 kb on - strand, within yehL at 437.561 kb on + strand, within yehL at 437.561 kb on + strand, within yehL at 437.583 kb on + strand, within yehL at 437.714 kb on - strand, within yehL at 437.739 kb on + strand, within yehL at 437.752 kb on - strand, within yehL
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 433,740 - yehP HEPCGN_02660 0.29 -0.9 433,895 + yehP HEPCGN_02660 0.42 -0.6 433,939 + yehP HEPCGN_02660 0.46 +0.8 433,960 - yehP HEPCGN_02660 0.48 -0.7 433,960 - yehP HEPCGN_02660 0.48 -0.1 434,110 + yehP HEPCGN_02660 0.61 -0.0 434,156 + yehP HEPCGN_02660 0.65 -0.5 434,157 - yehP HEPCGN_02660 0.65 -0.2 434,157 - yehP HEPCGN_02660 0.65 +1.0 434,221 + yehP HEPCGN_02660 0.71 +0.9 434,222 - yehP HEPCGN_02660 0.71 +0.8 434,366 + yehP HEPCGN_02660 0.84 +0.3 434,366 + yehP HEPCGN_02660 0.84 +0.3 434,367 - yehP HEPCGN_02660 0.84 +1.1 434,415 + yehP HEPCGN_02660 0.88 +0.6 434,514 - +0.0 434,790 + HEPCGN_02665 0.11 +0.1 435,065 + HEPCGN_02665 0.23 -0.4 435,219 - HEPCGN_02665 0.30 -0.7 435,311 + HEPCGN_02665 0.34 +0.6 435,311 + HEPCGN_02665 0.34 -0.7 435,311 + HEPCGN_02665 0.34 +0.0 435,312 - HEPCGN_02665 0.34 +0.8 435,324 + HEPCGN_02665 0.34 +0.1 435,324 + HEPCGN_02665 0.34 -2.7 435,475 - HEPCGN_02665 0.41 +0.2 435,546 - HEPCGN_02665 0.44 +0.3 435,546 - HEPCGN_02665 0.44 -0.4 435,585 + HEPCGN_02665 0.46 -1.7 435,598 - HEPCGN_02665 0.46 +0.6 435,639 + HEPCGN_02665 0.48 -0.2 435,644 + HEPCGN_02665 0.48 +1.0 435,763 - HEPCGN_02665 0.53 +1.6 435,812 - HEPCGN_02665 0.56 -0.5 435,863 + HEPCGN_02665 0.58 +1.4 435,892 - HEPCGN_02665 0.59 -0.0 435,948 - HEPCGN_02665 0.62 -0.5 436,082 - HEPCGN_02665 0.67 +1.1 436,239 + HEPCGN_02665 0.74 -0.4 436,240 - HEPCGN_02665 0.74 +0.1 436,427 + HEPCGN_02665 0.83 +0.8 436,475 + HEPCGN_02665 0.85 -0.0 436,476 - HEPCGN_02665 0.85 -0.7 436,531 + HEPCGN_02665 0.87 -0.2 436,563 + HEPCGN_02665 0.89 -0.9 436,637 - -2.6 436,655 + +0.6 436,693 - -0.2 436,693 - -0.2 436,703 + +0.8 436,732 + +0.6 436,787 + +0.0 436,809 + +0.7 436,862 + +0.8 436,862 + +0.3 436,884 + +0.3 436,884 + -0.2 436,885 - -0.9 436,911 - +1.1 437,039 - yehL HEPCGN_02670 0.19 +0.1 437,065 - yehL HEPCGN_02670 0.21 -1.9 437,409 + yehL HEPCGN_02670 0.53 +0.6 437,409 + yehL HEPCGN_02670 0.53 -0.9 437,450 - yehL HEPCGN_02670 0.57 +0.3 437,549 + yehL HEPCGN_02670 0.66 +1.0 437,550 - yehL HEPCGN_02670 0.66 +0.5 437,561 + yehL HEPCGN_02670 0.67 -0.2 437,561 + yehL HEPCGN_02670 0.67 -0.5 437,583 + yehL HEPCGN_02670 0.69 +0.9 437,714 - yehL HEPCGN_02670 0.81 +0.0 437,739 + yehL HEPCGN_02670 0.83 +1.2 437,752 - yehL HEPCGN_02670 0.84 +0.1
Or see this region's nucleotide sequence