Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_01245 and HEPCGN_01250 are separated by 14 nucleotides HEPCGN_01250 and HEPCGN_01255 overlap by 1 nucleotides HEPCGN_01255 and HEPCGN_01260 are separated by 27 nucleotides
HEPCGN_01245: HEPCGN_01245 - 3-oxoacyl-ACP reductase, at 175,552 to 176,307
_01245
HEPCGN_01250: HEPCGN_01250 - hydrolase, at 176,322 to 176,633
_01250
HEPCGN_01255: HEPCGN_01255 - hydrolase, at 176,633 to 177,829
_01255
HEPCGN_01260: HEPCGN_01260 - C4-dicarboxylate ABC transporter, at 177,857 to 178,825
_01260
Position (kb) 176
177
178 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 175.638 kb on - strand, within HEPCGN_01245 at 175.638 kb on - strand, within HEPCGN_01245 at 175.933 kb on - strand, within HEPCGN_01245 at 176.033 kb on - strand, within HEPCGN_01245 at 176.212 kb on - strand, within HEPCGN_01245 at 176.322 kb on - strand at 176.432 kb on + strand, within HEPCGN_01250 at 176.442 kb on - strand, within HEPCGN_01250 at 176.499 kb on + strand, within HEPCGN_01250 at 176.562 kb on - strand, within HEPCGN_01250 at 176.642 kb on + strand at 176.642 kb on + strand at 176.675 kb on - strand at 176.675 kb on - strand at 176.675 kb on - strand at 176.688 kb on + strand at 176.696 kb on - strand at 176.796 kb on - strand, within HEPCGN_01255 at 176.830 kb on + strand, within HEPCGN_01255 at 176.838 kb on + strand, within HEPCGN_01255 at 176.838 kb on + strand, within HEPCGN_01255 at 176.838 kb on + strand, within HEPCGN_01255 at 176.838 kb on + strand, within HEPCGN_01255 at 176.980 kb on + strand, within HEPCGN_01255 at 177.020 kb on - strand, within HEPCGN_01255 at 177.020 kb on - strand, within HEPCGN_01255 at 177.062 kb on - strand, within HEPCGN_01255 at 177.115 kb on - strand, within HEPCGN_01255 at 177.199 kb on + strand, within HEPCGN_01255 at 177.199 kb on + strand, within HEPCGN_01255 at 177.200 kb on - strand, within HEPCGN_01255 at 177.273 kb on - strand, within HEPCGN_01255 at 177.308 kb on - strand, within HEPCGN_01255 at 177.357 kb on - strand, within HEPCGN_01255 at 177.359 kb on - strand, within HEPCGN_01255 at 177.534 kb on + strand, within HEPCGN_01255 at 177.621 kb on + strand, within HEPCGN_01255 at 177.694 kb on + strand, within HEPCGN_01255 at 177.698 kb on - strand, within HEPCGN_01255 at 177.698 kb on - strand, within HEPCGN_01255 at 177.777 kb on - strand at 177.927 kb on + strand at 178.105 kb on + strand, within HEPCGN_01260 at 178.280 kb on + strand, within HEPCGN_01260 at 178.286 kb on + strand, within HEPCGN_01260 at 178.542 kb on - strand, within HEPCGN_01260 at 178.609 kb on - strand, within HEPCGN_01260 at 178.615 kb on + strand, within HEPCGN_01260 at 178.631 kb on + strand, within HEPCGN_01260 at 178.645 kb on - strand, within HEPCGN_01260 at 178.717 kb on + strand, within HEPCGN_01260
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 175,638 - HEPCGN_01245 0.11 -0.4 175,638 - HEPCGN_01245 0.11 +1.6 175,933 - HEPCGN_01245 0.50 +1.4 176,033 - HEPCGN_01245 0.64 -0.5 176,212 - HEPCGN_01245 0.87 +0.4 176,322 - +0.0 176,432 + HEPCGN_01250 0.35 -0.7 176,442 - HEPCGN_01250 0.38 -3.4 176,499 + HEPCGN_01250 0.57 -1.0 176,562 - HEPCGN_01250 0.77 +0.0 176,642 + +1.3 176,642 + +0.3 176,675 - +0.3 176,675 - -1.1 176,675 - -1.4 176,688 + -1.3 176,696 - +0.5 176,796 - HEPCGN_01255 0.14 -0.2 176,830 + HEPCGN_01255 0.16 -3.4 176,838 + HEPCGN_01255 0.17 +0.3 176,838 + HEPCGN_01255 0.17 -2.3 176,838 + HEPCGN_01255 0.17 -0.3 176,838 + HEPCGN_01255 0.17 -0.1 176,980 + HEPCGN_01255 0.29 +0.8 177,020 - HEPCGN_01255 0.32 +0.0 177,020 - HEPCGN_01255 0.32 -1.0 177,062 - HEPCGN_01255 0.36 -0.6 177,115 - HEPCGN_01255 0.40 -1.7 177,199 + HEPCGN_01255 0.47 +0.3 177,199 + HEPCGN_01255 0.47 +1.8 177,200 - HEPCGN_01255 0.47 +0.7 177,273 - HEPCGN_01255 0.53 +0.2 177,308 - HEPCGN_01255 0.56 +2.7 177,357 - HEPCGN_01255 0.60 +0.3 177,359 - HEPCGN_01255 0.61 -0.2 177,534 + HEPCGN_01255 0.75 +0.4 177,621 + HEPCGN_01255 0.83 +0.2 177,694 + HEPCGN_01255 0.89 -0.6 177,698 - HEPCGN_01255 0.89 -1.7 177,698 - HEPCGN_01255 0.89 +0.2 177,777 - +0.1 177,927 + +1.6 178,105 + HEPCGN_01260 0.26 -0.2 178,280 + HEPCGN_01260 0.44 +0.1 178,286 + HEPCGN_01260 0.44 +0.1 178,542 - HEPCGN_01260 0.71 -0.0 178,609 - HEPCGN_01260 0.78 -0.0 178,615 + HEPCGN_01260 0.78 +0.0 178,631 + HEPCGN_01260 0.80 +0.2 178,645 - HEPCGN_01260 0.81 +0.3 178,717 + HEPCGN_01260 0.89 -0.2
Or see this region's nucleotide sequence