Strain Fitness in Escherichia coli ECOR38 around HEPCGN_00585

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcusS and cusR overlap by 11 nucleotidescusR and ibeB are separated by 156 nucleotides HEPCGN_00580: cusS - Cu(+)/Ag(+) sensor histidine kinase CusS, at 40,115 to 41,557 cusS HEPCGN_00585: cusR - copper response regulator transcription factor CusR, at 41,547 to 42,230 cusR HEPCGN_00590: ibeB - Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC, at 42,387 to 43,769 ibeB Position (kb) 41 42 43Strain fitness (log2 ratio) -2 -1 0 1at 40.607 kb on - strand, within cusSat 40.607 kb on - strand, within cusSat 40.649 kb on - strand, within cusSat 40.726 kb on + strand, within cusSat 40.727 kb on - strand, within cusSat 40.796 kb on - strand, within cusSat 40.808 kb on - strand, within cusSat 40.808 kb on - strand, within cusSat 40.808 kb on - strand, within cusSat 40.888 kb on + strand, within cusSat 40.889 kb on - strand, within cusSat 40.936 kb on + strand, within cusSat 40.936 kb on + strand, within cusSat 40.937 kb on - strand, within cusSat 40.937 kb on - strand, within cusSat 40.994 kb on - strand, within cusSat 41.018 kb on - strand, within cusSat 41.022 kb on + strand, within cusSat 41.022 kb on + strand, within cusSat 41.022 kb on + strand, within cusSat 41.023 kb on - strand, within cusSat 41.023 kb on - strand, within cusSat 41.056 kb on - strand, within cusSat 41.062 kb on + strand, within cusSat 41.062 kb on + strand, within cusSat 41.063 kb on - strand, within cusSat 41.064 kb on + strand, within cusSat 41.064 kb on + strand, within cusSat 41.104 kb on + strand, within cusSat 41.105 kb on - strand, within cusSat 41.131 kb on + strand, within cusSat 41.158 kb on + strand, within cusSat 41.181 kb on + strand, within cusSat 41.227 kb on + strand, within cusSat 41.262 kb on + strand, within cusSat 41.262 kb on + strand, within cusSat 41.263 kb on - strand, within cusSat 41.272 kb on + strand, within cusSat 41.324 kb on - strand, within cusSat 41.371 kb on + strand, within cusSat 41.371 kb on + strand, within cusSat 41.372 kb on - strand, within cusSat 41.416 kb on + strandat 41.417 kb on - strandat 41.575 kb on + strandat 41.763 kb on - strand, within cusRat 41.996 kb on + strand, within cusRat 42.020 kb on + strand, within cusRat 42.074 kb on + strand, within cusRat 42.074 kb on + strand, within cusRat 42.075 kb on - strand, within cusRat 42.075 kb on - strand, within cusRat 42.097 kb on + strand, within cusRat 42.098 kb on - strand, within cusRat 42.122 kb on - strand, within cusRat 42.260 kb on + strandat 42.532 kb on - strand, within ibeBat 42.873 kb on - strand, within ibeBat 42.959 kb on + strand, within ibeBat 43.014 kb on - strand, within ibeBat 43.048 kb on + strand, within ibeBat 43.103 kb on + strand, within ibeB

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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40,607 - cusS HEPCGN_00580 0.34 +0.1
40,607 - cusS HEPCGN_00580 0.34 +0.6
40,649 - cusS HEPCGN_00580 0.37 +0.2
40,726 + cusS HEPCGN_00580 0.42 -0.6
40,727 - cusS HEPCGN_00580 0.42 -1.1
40,796 - cusS HEPCGN_00580 0.47 -0.4
40,808 - cusS HEPCGN_00580 0.48 +0.1
40,808 - cusS HEPCGN_00580 0.48 +0.1
40,808 - cusS HEPCGN_00580 0.48 +0.1
40,888 + cusS HEPCGN_00580 0.54 -1.1
40,889 - cusS HEPCGN_00580 0.54 -0.3
40,936 + cusS HEPCGN_00580 0.57 -0.3
40,936 + cusS HEPCGN_00580 0.57 +0.6
40,937 - cusS HEPCGN_00580 0.57 +0.3
40,937 - cusS HEPCGN_00580 0.57 -0.2
40,994 - cusS HEPCGN_00580 0.61 -1.1
41,018 - cusS HEPCGN_00580 0.63 -0.2
41,022 + cusS HEPCGN_00580 0.63 -0.2
41,022 + cusS HEPCGN_00580 0.63 -0.1
41,022 + cusS HEPCGN_00580 0.63 +0.6
41,023 - cusS HEPCGN_00580 0.63 +0.3
41,023 - cusS HEPCGN_00580 0.63 +0.2
41,056 - cusS HEPCGN_00580 0.65 +0.1
41,062 + cusS HEPCGN_00580 0.66 +1.0
41,062 + cusS HEPCGN_00580 0.66 -0.1
41,063 - cusS HEPCGN_00580 0.66 -0.6
41,064 + cusS HEPCGN_00580 0.66 -0.1
41,064 + cusS HEPCGN_00580 0.66 -1.3
41,104 + cusS HEPCGN_00580 0.69 -0.0
41,105 - cusS HEPCGN_00580 0.69 -1.1
41,131 + cusS HEPCGN_00580 0.70 +0.2
41,158 + cusS HEPCGN_00580 0.72 -1.4
41,181 + cusS HEPCGN_00580 0.74 -0.4
41,227 + cusS HEPCGN_00580 0.77 -0.5
41,262 + cusS HEPCGN_00580 0.79 -0.8
41,262 + cusS HEPCGN_00580 0.79 -0.3
41,263 - cusS HEPCGN_00580 0.80 +0.8
41,272 + cusS HEPCGN_00580 0.80 +0.1
41,324 - cusS HEPCGN_00580 0.84 +0.6
41,371 + cusS HEPCGN_00580 0.87 +0.1
41,371 + cusS HEPCGN_00580 0.87 -1.1
41,372 - cusS HEPCGN_00580 0.87 +0.1
41,416 + +0.5
41,417 - -2.2
41,575 + -1.8
41,763 - cusR HEPCGN_00585 0.32 -0.3
41,996 + cusR HEPCGN_00585 0.66 -0.2
42,020 + cusR HEPCGN_00585 0.69 -0.6
42,074 + cusR HEPCGN_00585 0.77 +0.0
42,074 + cusR HEPCGN_00585 0.77 +1.0
42,075 - cusR HEPCGN_00585 0.77 -0.9
42,075 - cusR HEPCGN_00585 0.77 +0.6
42,097 + cusR HEPCGN_00585 0.80 -0.4
42,098 - cusR HEPCGN_00585 0.81 -1.2
42,122 - cusR HEPCGN_00585 0.84 -1.4
42,260 + +0.2
42,532 - ibeB HEPCGN_00590 0.10 -0.4
42,873 - ibeB HEPCGN_00590 0.35 +0.2
42,959 + ibeB HEPCGN_00590 0.41 -0.1
43,014 - ibeB HEPCGN_00590 0.45 +0.0
43,048 + ibeB HEPCGN_00590 0.48 +0.5
43,103 + ibeB HEPCGN_00590 0.52 -0.1

Or see this region's nucleotide sequence