Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nfrA and nrfB overlap by 14 nucleotides nrfB and nrfB are separated by 24 nucleotides nrfB and cusS are separated by 149 nucleotides
HEPCGN_00565: nfrA - bacteriophage adsorption protein NfrA, at 34,769 to 37,741
nfrA
HEPCGN_00570: nrfB - phage adsorption protein NrfB, at 37,728 to 37,997
nrfB
HEPCGN_00575: nrfB - phage adsorption protein NrfB, at 38,022 to 39,965
nrfB
HEPCGN_00580: cusS - Cu(+)/Ag(+) sensor histidine kinase CusS, at 40,115 to 41,557
cusS
Position (kb) 38
39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 37.092 kb on - strand, within nfrA at 37.117 kb on + strand, within nfrA at 37.118 kb on - strand, within nfrA at 37.118 kb on - strand, within nfrA at 37.119 kb on + strand, within nfrA at 37.121 kb on + strand, within nfrA at 37.121 kb on + strand, within nfrA at 37.121 kb on + strand, within nfrA at 37.122 kb on - strand, within nfrA at 37.122 kb on - strand, within nfrA at 37.122 kb on - strand, within nfrA at 37.126 kb on + strand, within nfrA at 37.127 kb on - strand, within nfrA at 37.127 kb on - strand, within nfrA at 37.127 kb on - strand, within nfrA at 37.244 kb on + strand, within nfrA at 37.244 kb on + strand, within nfrA at 37.244 kb on + strand, within nfrA at 37.245 kb on - strand, within nfrA at 37.348 kb on + strand, within nfrA at 37.470 kb on + strand at 37.485 kb on + strand at 37.485 kb on + strand at 37.502 kb on - strand at 37.523 kb on + strand at 37.523 kb on + strand at 37.524 kb on - strand at 37.524 kb on - strand at 37.525 kb on + strand at 37.526 kb on - strand at 37.527 kb on + strand at 37.562 kb on - strand at 37.932 kb on - strand, within nrfB at 37.946 kb on + strand, within nrfB at 37.969 kb on - strand, within nrfB at 37.999 kb on + strand at 38.000 kb on - strand at 38.059 kb on + strand at 38.059 kb on + strand at 38.060 kb on - strand at 38.060 kb on - strand at 38.147 kb on - strand at 38.590 kb on - strand, within nrfB at 38.658 kb on + strand, within nrfB at 38.818 kb on + strand, within nrfB at 38.877 kb on - strand, within nrfB at 38.911 kb on + strand, within nrfB at 38.912 kb on - strand, within nrfB at 38.949 kb on - strand, within nrfB at 38.949 kb on - strand, within nrfB at 39.023 kb on - strand, within nrfB at 39.377 kb on - strand, within nrfB at 39.377 kb on - strand, within nrfB at 39.416 kb on - strand, within nrfB at 39.423 kb on + strand, within nrfB at 39.424 kb on - strand, within nrfB at 39.576 kb on + strand, within nrfB at 39.576 kb on + strand, within nrfB at 39.582 kb on - strand, within nrfB at 39.662 kb on + strand, within nrfB at 39.830 kb on + strand at 39.916 kb on - strand at 39.938 kb on + strand at 39.998 kb on - strand at 40.010 kb on - strand at 40.049 kb on - strand at 40.051 kb on + strand at 40.051 kb on + strand at 40.052 kb on - strand at 40.052 kb on - strand at 40.052 kb on - strand at 40.052 kb on - strand at 40.062 kb on - strand at 40.092 kb on - strand at 40.092 kb on - strand at 40.180 kb on + strand at 40.287 kb on - strand, within cusS at 40.287 kb on - strand, within cusS at 40.287 kb on - strand, within cusS at 40.387 kb on + strand, within cusS at 40.387 kb on + strand, within cusS at 40.607 kb on - strand, within cusS at 40.607 kb on - strand, within cusS at 40.649 kb on - strand, within cusS at 40.726 kb on + strand, within cusS at 40.727 kb on - strand, within cusS at 40.796 kb on - strand, within cusS at 40.808 kb on - strand, within cusS at 40.808 kb on - strand, within cusS at 40.808 kb on - strand, within cusS at 40.888 kb on + strand, within cusS at 40.889 kb on - strand, within cusS at 40.936 kb on + strand, within cusS at 40.936 kb on + strand, within cusS at 40.937 kb on - strand, within cusS at 40.937 kb on - strand, within cusS
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 37,092 - nfrA HEPCGN_00565 0.78 -2.0 37,117 + nfrA HEPCGN_00565 0.79 +0.8 37,118 - nfrA HEPCGN_00565 0.79 +0.1 37,118 - nfrA HEPCGN_00565 0.79 +0.5 37,119 + nfrA HEPCGN_00565 0.79 -1.1 37,121 + nfrA HEPCGN_00565 0.79 +0.3 37,121 + nfrA HEPCGN_00565 0.79 +0.3 37,121 + nfrA HEPCGN_00565 0.79 -1.5 37,122 - nfrA HEPCGN_00565 0.79 +1.5 37,122 - nfrA HEPCGN_00565 0.79 -0.6 37,122 - nfrA HEPCGN_00565 0.79 +0.4 37,126 + nfrA HEPCGN_00565 0.79 +1.1 37,127 - nfrA HEPCGN_00565 0.79 -2.1 37,127 - nfrA HEPCGN_00565 0.79 +0.4 37,127 - nfrA HEPCGN_00565 0.79 +0.1 37,244 + nfrA HEPCGN_00565 0.83 -0.1 37,244 + nfrA HEPCGN_00565 0.83 -0.4 37,244 + nfrA HEPCGN_00565 0.83 -1.2 37,245 - nfrA HEPCGN_00565 0.83 +0.1 37,348 + nfrA HEPCGN_00565 0.87 +0.1 37,470 + -0.0 37,485 + +1.7 37,485 + +1.5 37,502 - +0.4 37,523 + -0.4 37,523 + -0.2 37,524 - -1.6 37,524 - -0.4 37,525 + -0.2 37,526 - +0.2 37,527 + -1.2 37,562 - -1.5 37,932 - nrfB HEPCGN_00570 0.76 +0.9 37,946 + nrfB HEPCGN_00570 0.81 -3.6 37,969 - nrfB HEPCGN_00570 0.89 -0.5 37,999 + -0.1 38,000 - -0.8 38,059 + +0.5 38,059 + -1.0 38,060 - -2.0 38,060 - -0.2 38,147 - -1.7 38,590 - nrfB HEPCGN_00575 0.29 +0.1 38,658 + nrfB HEPCGN_00575 0.33 +0.5 38,818 + nrfB HEPCGN_00575 0.41 -0.2 38,877 - nrfB HEPCGN_00575 0.44 -0.7 38,911 + nrfB HEPCGN_00575 0.46 -0.8 38,912 - nrfB HEPCGN_00575 0.46 -1.8 38,949 - nrfB HEPCGN_00575 0.48 -0.7 38,949 - nrfB HEPCGN_00575 0.48 -0.4 39,023 - nrfB HEPCGN_00575 0.51 -0.3 39,377 - nrfB HEPCGN_00575 0.70 -1.4 39,377 - nrfB HEPCGN_00575 0.70 -0.8 39,416 - nrfB HEPCGN_00575 0.72 +0.6 39,423 + nrfB HEPCGN_00575 0.72 -1.0 39,424 - nrfB HEPCGN_00575 0.72 -1.2 39,576 + nrfB HEPCGN_00575 0.80 +0.3 39,576 + nrfB HEPCGN_00575 0.80 -0.2 39,582 - nrfB HEPCGN_00575 0.80 -0.3 39,662 + nrfB HEPCGN_00575 0.84 -0.3 39,830 + +0.2 39,916 - +0.6 39,938 + -0.8 39,998 - -0.1 40,010 - -0.6 40,049 - -2.1 40,051 + +0.5 40,051 + +1.1 40,052 - -0.2 40,052 - +0.0 40,052 - -0.3 40,052 - +0.4 40,062 - -0.4 40,092 - -0.2 40,092 - +0.1 40,180 + -0.2 40,287 - cusS HEPCGN_00580 0.12 +0.5 40,287 - cusS HEPCGN_00580 0.12 -1.5 40,287 - cusS HEPCGN_00580 0.12 +1.0 40,387 + cusS HEPCGN_00580 0.19 -1.4 40,387 + cusS HEPCGN_00580 0.19 -0.6 40,607 - cusS HEPCGN_00580 0.34 +0.1 40,607 - cusS HEPCGN_00580 0.34 +0.6 40,649 - cusS HEPCGN_00580 0.37 +0.2 40,726 + cusS HEPCGN_00580 0.42 -0.6 40,727 - cusS HEPCGN_00580 0.42 -1.1 40,796 - cusS HEPCGN_00580 0.47 -0.4 40,808 - cusS HEPCGN_00580 0.48 +0.1 40,808 - cusS HEPCGN_00580 0.48 +0.1 40,808 - cusS HEPCGN_00580 0.48 +0.1 40,888 + cusS HEPCGN_00580 0.54 -1.1 40,889 - cusS HEPCGN_00580 0.54 -0.3 40,936 + cusS HEPCGN_00580 0.57 -0.3 40,936 + cusS HEPCGN_00580 0.57 +0.6 40,937 - cusS HEPCGN_00580 0.57 +0.3 40,937 - cusS HEPCGN_00580 0.57 -0.2
Or see this region's nucleotide sequence