Strain Fitness in Escherichia coli ECOR27 around NOLOHH_22865

Experiment: L-Rhamnose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_22860 and NOLOHH_22865 are separated by 528 nucleotidesNOLOHH_22865 and NOLOHH_22870 are separated by 149 nucleotidesNOLOHH_22870 and NOLOHH_22875 overlap by 4 nucleotides NOLOHH_22860: NOLOHH_22860 - terminase small subunit, at 4,515,784 to 4,516,311 _22860 NOLOHH_22865: NOLOHH_22865 - ORF11CD3 domain-containing protein, at 4,516,840 to 4,517,445 _22865 NOLOHH_22870: NOLOHH_22870 - lysis protein, at 4,517,595 to 4,518,032 _22870 NOLOHH_22875: NOLOHH_22875 - Endolysin, at 4,518,029 to 4,518,505 _22875 Position (kb) 4516 4517 4518Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4515.873 kb on + strand, within NOLOHH_22860at 4515.874 kb on - strand, within NOLOHH_22860at 4515.925 kb on - strand, within NOLOHH_22860at 4516.017 kb on + strand, within NOLOHH_22860at 4516.092 kb on + strand, within NOLOHH_22860at 4516.110 kb on - strand, within NOLOHH_22860at 4516.122 kb on + strand, within NOLOHH_22860at 4516.210 kb on - strand, within NOLOHH_22860at 4516.316 kb on + strandat 4516.316 kb on + strandat 4516.325 kb on + strandat 4516.329 kb on + strandat 4516.329 kb on + strandat 4516.338 kb on + strandat 4516.339 kb on - strandat 4516.346 kb on + strandat 4516.399 kb on + strandat 4516.407 kb on + strandat 4516.407 kb on + strandat 4516.461 kb on + strandat 4516.591 kb on + strandat 4516.625 kb on + strandat 4516.637 kb on - strandat 4516.661 kb on - strandat 4516.798 kb on - strandat 4516.845 kb on + strandat 4516.846 kb on - strandat 4516.846 kb on - strandat 4516.904 kb on - strand, within NOLOHH_22865at 4516.954 kb on - strand, within NOLOHH_22865at 4516.954 kb on - strand, within NOLOHH_22865at 4516.954 kb on - strand, within NOLOHH_22865at 4516.979 kb on + strand, within NOLOHH_22865at 4516.979 kb on + strand, within NOLOHH_22865at 4516.979 kb on + strand, within NOLOHH_22865at 4516.980 kb on - strand, within NOLOHH_22865at 4516.980 kb on - strand, within NOLOHH_22865at 4516.980 kb on - strand, within NOLOHH_22865at 4516.980 kb on - strand, within NOLOHH_22865at 4516.991 kb on - strand, within NOLOHH_22865at 4517.029 kb on - strand, within NOLOHH_22865at 4517.053 kb on - strand, within NOLOHH_22865at 4517.062 kb on + strand, within NOLOHH_22865at 4517.062 kb on + strand, within NOLOHH_22865at 4517.063 kb on - strand, within NOLOHH_22865at 4517.063 kb on - strand, within NOLOHH_22865at 4517.063 kb on - strand, within NOLOHH_22865at 4517.063 kb on - strand, within NOLOHH_22865at 4517.063 kb on - strand, within NOLOHH_22865at 4517.063 kb on - strand, within NOLOHH_22865at 4517.064 kb on + strand, within NOLOHH_22865at 4517.065 kb on - strand, within NOLOHH_22865at 4517.065 kb on - strand, within NOLOHH_22865at 4517.067 kb on - strand, within NOLOHH_22865at 4517.067 kb on - strand, within NOLOHH_22865at 4517.131 kb on - strand, within NOLOHH_22865at 4517.255 kb on - strand, within NOLOHH_22865at 4517.329 kb on - strand, within NOLOHH_22865at 4517.333 kb on - strand, within NOLOHH_22865at 4517.366 kb on - strand, within NOLOHH_22865at 4517.521 kb on - strandat 4517.525 kb on - strandat 4517.575 kb on - strandat 4517.616 kb on - strandat 4517.620 kb on + strandat 4517.621 kb on - strandat 4517.621 kb on - strandat 4517.621 kb on - strandat 4517.632 kb on + strandat 4517.632 kb on + strandat 4517.680 kb on + strand, within NOLOHH_22870at 4517.680 kb on + strand, within NOLOHH_22870at 4517.681 kb on - strand, within NOLOHH_22870at 4517.702 kb on + strand, within NOLOHH_22870at 4517.703 kb on - strand, within NOLOHH_22870at 4517.852 kb on - strand, within NOLOHH_22870at 4517.871 kb on + strand, within NOLOHH_22870at 4517.871 kb on + strand, within NOLOHH_22870at 4517.894 kb on + strand, within NOLOHH_22870at 4517.894 kb on + strand, within NOLOHH_22870at 4518.094 kb on + strand, within NOLOHH_22875at 4518.139 kb on + strand, within NOLOHH_22875at 4518.170 kb on - strand, within NOLOHH_22875at 4518.271 kb on + strand, within NOLOHH_22875at 4518.271 kb on + strand, within NOLOHH_22875at 4518.272 kb on - strand, within NOLOHH_22875at 4518.272 kb on - strand, within NOLOHH_22875at 4518.276 kb on + strand, within NOLOHH_22875at 4518.383 kb on + strand, within NOLOHH_22875

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
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4,515,873 + NOLOHH_22860 0.17 -2.2
4,515,874 - NOLOHH_22860 0.17 +0.5
4,515,925 - NOLOHH_22860 0.27 +0.4
4,516,017 + NOLOHH_22860 0.44 -0.0
4,516,092 + NOLOHH_22860 0.58 -0.7
4,516,110 - NOLOHH_22860 0.62 +0.8
4,516,122 + NOLOHH_22860 0.64 -1.2
4,516,210 - NOLOHH_22860 0.81 +0.3
4,516,316 + -0.6
4,516,316 + -3.2
4,516,325 + -1.3
4,516,329 + +0.6
4,516,329 + +0.5
4,516,338 + -1.3
4,516,339 - -0.1
4,516,346 + -2.2
4,516,399 + -0.6
4,516,407 + -0.2
4,516,407 + -0.6
4,516,461 + +0.8
4,516,591 + -0.3
4,516,625 + -0.1
4,516,637 - -1.3
4,516,661 - -3.5
4,516,798 - -0.4
4,516,845 + -0.8
4,516,846 - +1.5
4,516,846 - +0.8
4,516,904 - NOLOHH_22865 0.11 -0.1
4,516,954 - NOLOHH_22865 0.19 +0.4
4,516,954 - NOLOHH_22865 0.19 -1.5
4,516,954 - NOLOHH_22865 0.19 +0.7
4,516,979 + NOLOHH_22865 0.23 -0.3
4,516,979 + NOLOHH_22865 0.23 -1.3
4,516,979 + NOLOHH_22865 0.23 -1.5
4,516,980 - NOLOHH_22865 0.23 +0.5
4,516,980 - NOLOHH_22865 0.23 +0.1
4,516,980 - NOLOHH_22865 0.23 -3.5
4,516,980 - NOLOHH_22865 0.23 +1.2
4,516,991 - NOLOHH_22865 0.25 -1.7
4,517,029 - NOLOHH_22865 0.31 +0.3
4,517,053 - NOLOHH_22865 0.35 +0.7
4,517,062 + NOLOHH_22865 0.37 +2.2
4,517,062 + NOLOHH_22865 0.37 -0.0
4,517,063 - NOLOHH_22865 0.37 +0.7
4,517,063 - NOLOHH_22865 0.37 -2.2
4,517,063 - NOLOHH_22865 0.37 -0.3
4,517,063 - NOLOHH_22865 0.37 -0.3
4,517,063 - NOLOHH_22865 0.37 -3.9
4,517,063 - NOLOHH_22865 0.37 -2.8
4,517,064 + NOLOHH_22865 0.37 -2.1
4,517,065 - NOLOHH_22865 0.37 +1.4
4,517,065 - NOLOHH_22865 0.37 +2.4
4,517,067 - NOLOHH_22865 0.37 +0.2
4,517,067 - NOLOHH_22865 0.37 +0.3
4,517,131 - NOLOHH_22865 0.48 -1.9
4,517,255 - NOLOHH_22865 0.68 -0.1
4,517,329 - NOLOHH_22865 0.81 +0.4
4,517,333 - NOLOHH_22865 0.81 +0.9
4,517,366 - NOLOHH_22865 0.87 -0.2
4,517,521 - -4.1
4,517,525 - -3.4
4,517,575 - +0.2
4,517,616 - +0.6
4,517,620 + -1.2
4,517,621 - +0.4
4,517,621 - +1.1
4,517,621 - -0.5
4,517,632 + +0.5
4,517,632 + -0.6
4,517,680 + NOLOHH_22870 0.19 -1.5
4,517,680 + NOLOHH_22870 0.19 -1.1
4,517,681 - NOLOHH_22870 0.20 +0.2
4,517,702 + NOLOHH_22870 0.24 -0.2
4,517,703 - NOLOHH_22870 0.25 -1.2
4,517,852 - NOLOHH_22870 0.59 +0.7
4,517,871 + NOLOHH_22870 0.63 -1.1
4,517,871 + NOLOHH_22870 0.63 +1.0
4,517,894 + NOLOHH_22870 0.68 +0.4
4,517,894 + NOLOHH_22870 0.68 -0.2
4,518,094 + NOLOHH_22875 0.14 +0.9
4,518,139 + NOLOHH_22875 0.23 +0.6
4,518,170 - NOLOHH_22875 0.30 +2.0
4,518,271 + NOLOHH_22875 0.51 -2.0
4,518,271 + NOLOHH_22875 0.51 +0.1
4,518,272 - NOLOHH_22875 0.51 -3.8
4,518,272 - NOLOHH_22875 0.51 +1.3
4,518,276 + NOLOHH_22875 0.52 +1.6
4,518,383 + NOLOHH_22875 0.74 -3.8

Or see this region's nucleotide sequence