Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rpsA and cmk are separated by 110 nucleotides cmk and ycaL are separated by 172 nucleotides
NOLOHH_22030: rpsA - 30S ribosomal protein S1, at 4,339,303 to 4,340,976
rpsA
NOLOHH_22035: cmk - (d)CMP kinase, at 4,341,087 to 4,341,770
cmk
NOLOHH_22040: ycaL - metallopeptidase YcaL, at 4,341,943 to 4,342,707
ycaL
Position (kb)
4341
4342 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4341.805 kb on - strand at 4341.873 kb on + strand at 4341.889 kb on + strand at 4341.900 kb on + strand at 4341.901 kb on - strand at 4341.941 kb on - strand at 4341.944 kb on + strand at 4341.945 kb on - strand at 4341.948 kb on + strand at 4342.135 kb on - strand, within ycaL at 4342.135 kb on - strand, within ycaL at 4342.146 kb on - strand, within ycaL at 4342.415 kb on + strand, within ycaL at 4342.415 kb on + strand, within ycaL at 4342.416 kb on - strand, within ycaL at 4342.416 kb on - strand, within ycaL at 4342.416 kb on - strand, within ycaL at 4342.416 kb on - strand, within ycaL at 4342.416 kb on - strand, within ycaL at 4342.422 kb on + strand, within ycaL at 4342.423 kb on - strand, within ycaL at 4342.424 kb on + strand, within ycaL at 4342.425 kb on - strand, within ycaL at 4342.425 kb on - strand, within ycaL at 4342.425 kb on - strand, within ycaL at 4342.425 kb on - strand, within ycaL at 4342.446 kb on + strand, within ycaL at 4342.446 kb on + strand, within ycaL at 4342.447 kb on - strand, within ycaL at 4342.447 kb on - strand, within ycaL at 4342.485 kb on + strand, within ycaL at 4342.490 kb on + strand, within ycaL at 4342.490 kb on + strand, within ycaL at 4342.491 kb on - strand, within ycaL at 4342.491 kb on - strand, within ycaL at 4342.577 kb on - strand, within ycaL at 4342.577 kb on - strand, within ycaL at 4342.591 kb on - strand, within ycaL at 4342.591 kb on - strand, within ycaL at 4342.621 kb on - strand, within ycaL at 4342.691 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 4,341,805 - +0.7 4,341,873 + +1.4 4,341,889 + -0.4 4,341,900 + +1.7 4,341,901 - +0.3 4,341,941 - +0.8 4,341,944 + +0.7 4,341,945 - -0.4 4,341,948 + +0.9 4,342,135 - ycaL NOLOHH_22040 0.25 +0.7 4,342,135 - ycaL NOLOHH_22040 0.25 +1.1 4,342,146 - ycaL NOLOHH_22040 0.27 +1.3 4,342,415 + ycaL NOLOHH_22040 0.62 -2.9 4,342,415 + ycaL NOLOHH_22040 0.62 -0.4 4,342,416 - ycaL NOLOHH_22040 0.62 -3.3 4,342,416 - ycaL NOLOHH_22040 0.62 +0.5 4,342,416 - ycaL NOLOHH_22040 0.62 +0.5 4,342,416 - ycaL NOLOHH_22040 0.62 -1.1 4,342,416 - ycaL NOLOHH_22040 0.62 -0.9 4,342,422 + ycaL NOLOHH_22040 0.63 -0.6 4,342,423 - ycaL NOLOHH_22040 0.63 -3.3 4,342,424 + ycaL NOLOHH_22040 0.63 +1.1 4,342,425 - ycaL NOLOHH_22040 0.63 -2.2 4,342,425 - ycaL NOLOHH_22040 0.63 -0.6 4,342,425 - ycaL NOLOHH_22040 0.63 -0.5 4,342,425 - ycaL NOLOHH_22040 0.63 -1.4 4,342,446 + ycaL NOLOHH_22040 0.66 +0.7 4,342,446 + ycaL NOLOHH_22040 0.66 +0.0 4,342,447 - ycaL NOLOHH_22040 0.66 -0.4 4,342,447 - ycaL NOLOHH_22040 0.66 -1.4 4,342,485 + ycaL NOLOHH_22040 0.71 -2.8 4,342,490 + ycaL NOLOHH_22040 0.72 +2.6 4,342,490 + ycaL NOLOHH_22040 0.72 +0.6 4,342,491 - ycaL NOLOHH_22040 0.72 +0.1 4,342,491 - ycaL NOLOHH_22040 0.72 -2.1 4,342,577 - ycaL NOLOHH_22040 0.83 -0.0 4,342,577 - ycaL NOLOHH_22040 0.83 +0.1 4,342,591 - ycaL NOLOHH_22040 0.85 +1.2 4,342,591 - ycaL NOLOHH_22040 0.85 +1.3 4,342,621 - ycaL NOLOHH_22040 0.89 -1.4 4,342,691 - +2.7
Or see this region's nucleotide sequence