Strain Fitness in Escherichia coli ECOR27 around NOLOHH_22035

Experiment: L-Rhamnose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpsA and cmk are separated by 110 nucleotidescmk and ycaL are separated by 172 nucleotides NOLOHH_22030: rpsA - 30S ribosomal protein S1, at 4,339,303 to 4,340,976 rpsA NOLOHH_22035: cmk - (d)CMP kinase, at 4,341,087 to 4,341,770 cmk NOLOHH_22040: ycaL - metallopeptidase YcaL, at 4,341,943 to 4,342,707 ycaL Position (kb) 4341 4342Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4341.805 kb on - strandat 4341.873 kb on + strandat 4341.889 kb on + strandat 4341.900 kb on + strandat 4341.901 kb on - strandat 4341.941 kb on - strandat 4341.944 kb on + strandat 4341.945 kb on - strandat 4341.948 kb on + strandat 4342.135 kb on - strand, within ycaLat 4342.135 kb on - strand, within ycaLat 4342.146 kb on - strand, within ycaLat 4342.415 kb on + strand, within ycaLat 4342.415 kb on + strand, within ycaLat 4342.416 kb on - strand, within ycaLat 4342.416 kb on - strand, within ycaLat 4342.416 kb on - strand, within ycaLat 4342.416 kb on - strand, within ycaLat 4342.416 kb on - strand, within ycaLat 4342.422 kb on + strand, within ycaLat 4342.423 kb on - strand, within ycaLat 4342.424 kb on + strand, within ycaLat 4342.425 kb on - strand, within ycaLat 4342.425 kb on - strand, within ycaLat 4342.425 kb on - strand, within ycaLat 4342.425 kb on - strand, within ycaLat 4342.446 kb on + strand, within ycaLat 4342.446 kb on + strand, within ycaLat 4342.447 kb on - strand, within ycaLat 4342.447 kb on - strand, within ycaLat 4342.485 kb on + strand, within ycaLat 4342.490 kb on + strand, within ycaLat 4342.490 kb on + strand, within ycaLat 4342.491 kb on - strand, within ycaLat 4342.491 kb on - strand, within ycaLat 4342.577 kb on - strand, within ycaLat 4342.577 kb on - strand, within ycaLat 4342.591 kb on - strand, within ycaLat 4342.591 kb on - strand, within ycaLat 4342.621 kb on - strand, within ycaLat 4342.691 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
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4,341,805 - +0.7
4,341,873 + +1.4
4,341,889 + -0.4
4,341,900 + +1.7
4,341,901 - +0.3
4,341,941 - +0.8
4,341,944 + +0.7
4,341,945 - -0.4
4,341,948 + +0.9
4,342,135 - ycaL NOLOHH_22040 0.25 +0.7
4,342,135 - ycaL NOLOHH_22040 0.25 +1.1
4,342,146 - ycaL NOLOHH_22040 0.27 +1.3
4,342,415 + ycaL NOLOHH_22040 0.62 -2.9
4,342,415 + ycaL NOLOHH_22040 0.62 -0.4
4,342,416 - ycaL NOLOHH_22040 0.62 -3.3
4,342,416 - ycaL NOLOHH_22040 0.62 +0.5
4,342,416 - ycaL NOLOHH_22040 0.62 +0.5
4,342,416 - ycaL NOLOHH_22040 0.62 -1.1
4,342,416 - ycaL NOLOHH_22040 0.62 -0.9
4,342,422 + ycaL NOLOHH_22040 0.63 -0.6
4,342,423 - ycaL NOLOHH_22040 0.63 -3.3
4,342,424 + ycaL NOLOHH_22040 0.63 +1.1
4,342,425 - ycaL NOLOHH_22040 0.63 -2.2
4,342,425 - ycaL NOLOHH_22040 0.63 -0.6
4,342,425 - ycaL NOLOHH_22040 0.63 -0.5
4,342,425 - ycaL NOLOHH_22040 0.63 -1.4
4,342,446 + ycaL NOLOHH_22040 0.66 +0.7
4,342,446 + ycaL NOLOHH_22040 0.66 +0.0
4,342,447 - ycaL NOLOHH_22040 0.66 -0.4
4,342,447 - ycaL NOLOHH_22040 0.66 -1.4
4,342,485 + ycaL NOLOHH_22040 0.71 -2.8
4,342,490 + ycaL NOLOHH_22040 0.72 +2.6
4,342,490 + ycaL NOLOHH_22040 0.72 +0.6
4,342,491 - ycaL NOLOHH_22040 0.72 +0.1
4,342,491 - ycaL NOLOHH_22040 0.72 -2.1
4,342,577 - ycaL NOLOHH_22040 0.83 -0.0
4,342,577 - ycaL NOLOHH_22040 0.83 +0.1
4,342,591 - ycaL NOLOHH_22040 0.85 +1.2
4,342,591 - ycaL NOLOHH_22040 0.85 +1.3
4,342,621 - ycaL NOLOHH_22040 0.89 -1.4
4,342,691 - +2.7

Or see this region's nucleotide sequence