Strain Fitness in Escherichia coli ECOR27 around NOLOHH_19690

Experiment: L-Rhamnose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_19685 and NOLOHH_19690 are separated by 2 nucleotidesNOLOHH_19690 and NOLOHH_19695 overlap by 20 nucleotides NOLOHH_19685: NOLOHH_19685 - DNA-binding protein, at 3,886,368 to 3,887,774 _19685 NOLOHH_19690: NOLOHH_19690 - terminase, at 3,887,777 to 3,889,078 _19690 NOLOHH_19695: NOLOHH_19695 - terminase small subunit, at 3,889,059 to 3,890,153 _19695 Position (kb) 3887 3888 3889 3890Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3887.084 kb on + strand, within NOLOHH_19685at 3887.180 kb on + strand, within NOLOHH_19685at 3887.181 kb on - strand, within NOLOHH_19685at 3887.183 kb on + strand, within NOLOHH_19685at 3887.426 kb on - strand, within NOLOHH_19685at 3887.554 kb on - strand, within NOLOHH_19685at 3887.736 kb on - strandat 3887.934 kb on - strand, within NOLOHH_19690at 3888.194 kb on - strand, within NOLOHH_19690at 3888.319 kb on - strand, within NOLOHH_19690at 3888.319 kb on - strand, within NOLOHH_19690at 3888.407 kb on - strand, within NOLOHH_19690at 3888.407 kb on - strand, within NOLOHH_19690at 3888.430 kb on + strand, within NOLOHH_19690at 3888.471 kb on + strand, within NOLOHH_19690at 3888.526 kb on - strand, within NOLOHH_19690at 3888.640 kb on + strand, within NOLOHH_19690at 3888.641 kb on - strand, within NOLOHH_19690at 3888.776 kb on - strand, within NOLOHH_19690at 3888.907 kb on - strand, within NOLOHH_19690at 3888.933 kb on - strand, within NOLOHH_19690at 3889.227 kb on - strand, within NOLOHH_19695at 3889.237 kb on - strand, within NOLOHH_19695at 3889.340 kb on - strand, within NOLOHH_19695at 3889.340 kb on - strand, within NOLOHH_19695at 3889.340 kb on - strand, within NOLOHH_19695at 3889.342 kb on - strand, within NOLOHH_19695at 3889.382 kb on + strand, within NOLOHH_19695at 3889.383 kb on - strand, within NOLOHH_19695at 3889.384 kb on + strand, within NOLOHH_19695at 3889.466 kb on - strand, within NOLOHH_19695at 3889.525 kb on - strand, within NOLOHH_19695at 3889.620 kb on - strand, within NOLOHH_19695at 3890.032 kb on + strand, within NOLOHH_19695

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
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3,887,084 + NOLOHH_19685 0.51 -0.2
3,887,180 + NOLOHH_19685 0.58 +1.1
3,887,181 - NOLOHH_19685 0.58 -0.9
3,887,183 + NOLOHH_19685 0.58 -1.8
3,887,426 - NOLOHH_19685 0.75 -1.4
3,887,554 - NOLOHH_19685 0.84 -3.6
3,887,736 - +0.5
3,887,934 - NOLOHH_19690 0.12 -2.7
3,888,194 - NOLOHH_19690 0.32 -1.1
3,888,319 - NOLOHH_19690 0.42 +0.6
3,888,319 - NOLOHH_19690 0.42 +1.6
3,888,407 - NOLOHH_19690 0.48 +0.7
3,888,407 - NOLOHH_19690 0.48 -2.6
3,888,430 + NOLOHH_19690 0.50 +1.4
3,888,471 + NOLOHH_19690 0.53 -0.8
3,888,526 - NOLOHH_19690 0.58 +1.6
3,888,640 + NOLOHH_19690 0.66 +2.0
3,888,641 - NOLOHH_19690 0.66 +1.1
3,888,776 - NOLOHH_19690 0.77 +1.7
3,888,907 - NOLOHH_19690 0.87 -0.6
3,888,933 - NOLOHH_19690 0.89 +1.1
3,889,227 - NOLOHH_19695 0.15 -0.9
3,889,237 - NOLOHH_19695 0.16 -0.0
3,889,340 - NOLOHH_19695 0.26 -0.6
3,889,340 - NOLOHH_19695 0.26 -0.7
3,889,340 - NOLOHH_19695 0.26 +1.1
3,889,342 - NOLOHH_19695 0.26 +0.9
3,889,382 + NOLOHH_19695 0.29 +1.9
3,889,383 - NOLOHH_19695 0.30 -0.1
3,889,384 + NOLOHH_19695 0.30 -2.7
3,889,466 - NOLOHH_19695 0.37 +0.3
3,889,525 - NOLOHH_19695 0.43 +2.2
3,889,620 - NOLOHH_19695 0.51 +1.3
3,890,032 + NOLOHH_19695 0.89 -2.0

Or see this region's nucleotide sequence