Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yidC and rnpA are separated by 223 nucleotides rnpA and rpmH are separated by 49 nucleotides rpmH and ysdD are separated by 229 nucleotides ysdD and dnaA are separated by 296 nucleotides
NOLOHH_07130: yidC - membrane protein insertase YidC, at 1,353,031 to 1,354,677
yidC
NOLOHH_07135: rnpA - ribonuclease P protein component, at 1,354,901 to 1,355,227
rnpA
NOLOHH_07140: rpmH - 50S ribosomal protein L34, at 1,355,277 to 1,355,417
rpmH
NOLOHH_07145: ysdD - Protein YsdD, at 1,355,647 to 1,355,727
ysdD
NOLOHH_07150: dnaA - chromosomal replication initiator protein DnaA, at 1,356,024 to 1,357,427
dnaA
Position (kb)
1354
1355
1356 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1354.786 kb on - strand at 1354.786 kb on - strand at 1354.869 kb on - strand at 1355.561 kb on - strand at 1355.600 kb on + strand at 1355.600 kb on + strand at 1355.601 kb on - strand at 1355.648 kb on + strand at 1355.650 kb on + strand at 1355.664 kb on + strand, within ysdD at 1355.692 kb on - strand, within ysdD at 1355.694 kb on + strand, within ysdD at 1355.695 kb on - strand, within ysdD at 1355.703 kb on + strand, within ysdD at 1355.719 kb on + strand, within ysdD at 1355.720 kb on - strand at 1355.720 kb on - strand at 1355.720 kb on - strand at 1355.720 kb on - strand at 1355.729 kb on - strand at 1355.749 kb on + strand at 1355.749 kb on + strand at 1355.749 kb on + strand at 1355.780 kb on + strand at 1355.781 kb on - strand at 1355.781 kb on - strand at 1355.786 kb on + strand at 1355.786 kb on + strand at 1355.813 kb on - strand at 1355.813 kb on - strand at 1355.857 kb on + strand at 1355.857 kb on + strand at 1355.862 kb on + strand at 1355.906 kb on + strand at 1355.906 kb on + strand at 1355.906 kb on + strand at 1355.906 kb on + strand at 1355.906 kb on + strand at 1355.908 kb on + strand at 1355.959 kb on + strand at 1355.959 kb on + strand at 1355.959 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 1,354,786 - -2.5 1,354,786 - +0.4 1,354,869 - -0.6 1,355,561 - +0.1 1,355,600 + +1.2 1,355,600 + -0.2 1,355,601 - -2.4 1,355,648 + +0.3 1,355,650 + -0.7 1,355,664 + ysdD NOLOHH_07145 0.21 -0.2 1,355,692 - ysdD NOLOHH_07145 0.56 +0.2 1,355,694 + ysdD NOLOHH_07145 0.58 +0.2 1,355,695 - ysdD NOLOHH_07145 0.59 -1.0 1,355,703 + ysdD NOLOHH_07145 0.69 +0.2 1,355,719 + ysdD NOLOHH_07145 0.89 -0.1 1,355,720 - +0.7 1,355,720 - -0.1 1,355,720 - +0.5 1,355,720 - -1.3 1,355,729 - +0.6 1,355,749 + +0.0 1,355,749 + +0.6 1,355,749 + -0.3 1,355,780 + +0.1 1,355,781 - +0.8 1,355,781 - -2.1 1,355,786 + -0.5 1,355,786 + -1.0 1,355,813 - +0.6 1,355,813 - -0.6 1,355,857 + +1.6 1,355,857 + +4.2 1,355,862 + +0.8 1,355,906 + +1.8 1,355,906 + +1.2 1,355,906 + +1.7 1,355,906 + +2.1 1,355,906 + +3.0 1,355,908 + +1.7 1,355,959 + +0.9 1,355,959 + +0.4 1,355,959 + +0.7
Or see this region's nucleotide sequence