Strain Fitness in Escherichia coli ECOR27 around NOLOHH_07135

Experiment: L-Rhamnose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyidC and rnpA are separated by 223 nucleotidesrnpA and rpmH are separated by 49 nucleotidesrpmH and ysdD are separated by 229 nucleotidesysdD and dnaA are separated by 296 nucleotides NOLOHH_07130: yidC - membrane protein insertase YidC, at 1,353,031 to 1,354,677 yidC NOLOHH_07135: rnpA - ribonuclease P protein component, at 1,354,901 to 1,355,227 rnpA NOLOHH_07140: rpmH - 50S ribosomal protein L34, at 1,355,277 to 1,355,417 rpmH NOLOHH_07145: ysdD - Protein YsdD, at 1,355,647 to 1,355,727 ysdD NOLOHH_07150: dnaA - chromosomal replication initiator protein DnaA, at 1,356,024 to 1,357,427 dnaA Position (kb) 1354 1355 1356Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1354.786 kb on - strandat 1354.786 kb on - strandat 1354.869 kb on - strandat 1355.561 kb on - strandat 1355.600 kb on + strandat 1355.600 kb on + strandat 1355.601 kb on - strandat 1355.648 kb on + strandat 1355.650 kb on + strandat 1355.664 kb on + strand, within ysdDat 1355.692 kb on - strand, within ysdDat 1355.694 kb on + strand, within ysdDat 1355.695 kb on - strand, within ysdDat 1355.703 kb on + strand, within ysdDat 1355.719 kb on + strand, within ysdDat 1355.720 kb on - strandat 1355.720 kb on - strandat 1355.720 kb on - strandat 1355.720 kb on - strandat 1355.729 kb on - strandat 1355.749 kb on + strandat 1355.749 kb on + strandat 1355.749 kb on + strandat 1355.780 kb on + strandat 1355.781 kb on - strandat 1355.781 kb on - strandat 1355.786 kb on + strandat 1355.786 kb on + strandat 1355.813 kb on - strandat 1355.813 kb on - strandat 1355.857 kb on + strandat 1355.857 kb on + strandat 1355.862 kb on + strandat 1355.906 kb on + strandat 1355.906 kb on + strandat 1355.906 kb on + strandat 1355.906 kb on + strandat 1355.906 kb on + strandat 1355.908 kb on + strandat 1355.959 kb on + strandat 1355.959 kb on + strandat 1355.959 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
remove
1,354,786 - -2.5
1,354,786 - +0.4
1,354,869 - -0.6
1,355,561 - +0.1
1,355,600 + +1.2
1,355,600 + -0.2
1,355,601 - -2.4
1,355,648 + +0.3
1,355,650 + -0.7
1,355,664 + ysdD NOLOHH_07145 0.21 -0.2
1,355,692 - ysdD NOLOHH_07145 0.56 +0.2
1,355,694 + ysdD NOLOHH_07145 0.58 +0.2
1,355,695 - ysdD NOLOHH_07145 0.59 -1.0
1,355,703 + ysdD NOLOHH_07145 0.69 +0.2
1,355,719 + ysdD NOLOHH_07145 0.89 -0.1
1,355,720 - +0.7
1,355,720 - -0.1
1,355,720 - +0.5
1,355,720 - -1.3
1,355,729 - +0.6
1,355,749 + +0.0
1,355,749 + +0.6
1,355,749 + -0.3
1,355,780 + +0.1
1,355,781 - +0.8
1,355,781 - -2.1
1,355,786 + -0.5
1,355,786 + -1.0
1,355,813 - +0.6
1,355,813 - -0.6
1,355,857 + +1.6
1,355,857 + +4.2
1,355,862 + +0.8
1,355,906 + +1.8
1,355,906 + +1.2
1,355,906 + +1.7
1,355,906 + +2.1
1,355,906 + +3.0
1,355,908 + +1.7
1,355,959 + +0.9
1,355,959 + +0.4
1,355,959 + +0.7

Or see this region's nucleotide sequence