Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt thrA and NOLOHH_03445 are separated by 80 nucleotides NOLOHH_03445 and lasT are separated by 213 nucleotides lasT and arcA are separated by 635 nucleotides
NOLOHH_03440: thrA - bifunctional aspartate kinase/homoserine dehydrogenase I, at 606,837 to 609,299
thrA
NOLOHH_03445: NOLOHH_03445 - thr operon leader peptide, at 609,380 to 609,445
_03445
NOLOHH_03450: lasT - tRNA/rRNA methyltransferase, at 609,659 to 610,345
lasT
NOLOHH_03455: arcA - two-component system response regulator ArcA, at 610,981 to 611,697
arcA
Position (kb) 609
610
611 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 608.697 kb on + strand, within thrA at 608.810 kb on + strand, within thrA at 608.821 kb on + strand, within thrA at 608.821 kb on + strand, within thrA at 608.821 kb on + strand, within thrA at 608.822 kb on - strand, within thrA at 608.822 kb on - strand, within thrA at 608.886 kb on + strand, within thrA at 608.975 kb on + strand, within thrA at 608.975 kb on + strand, within thrA at 608.975 kb on + strand, within thrA at 608.975 kb on + strand, within thrA at 608.976 kb on - strand, within thrA at 608.976 kb on - strand, within thrA at 608.976 kb on - strand, within thrA at 608.976 kb on - strand, within thrA at 608.976 kb on - strand, within thrA at 608.976 kb on - strand, within thrA at 608.997 kb on + strand, within thrA at 608.997 kb on + strand, within thrA at 608.997 kb on + strand, within thrA at 609.276 kb on - strand at 609.307 kb on - strand at 609.307 kb on - strand at 609.375 kb on - strand at 609.422 kb on - strand, within NOLOHH_03445 at 609.433 kb on + strand, within NOLOHH_03445 at 609.457 kb on - strand at 609.470 kb on + strand at 609.485 kb on + strand at 609.486 kb on - strand at 609.492 kb on - strand at 609.552 kb on - strand at 609.605 kb on + strand at 609.605 kb on + strand at 609.605 kb on + strand at 609.605 kb on + strand at 609.605 kb on + strand at 609.605 kb on + strand at 609.606 kb on - strand at 609.606 kb on - strand at 609.606 kb on - strand at 609.606 kb on - strand at 609.642 kb on - strand at 609.645 kb on + strand at 609.648 kb on + strand at 609.660 kb on + strand at 609.670 kb on + strand at 609.682 kb on + strand at 609.765 kb on - strand, within lasT at 609.765 kb on - strand, within lasT at 609.765 kb on - strand, within lasT at 609.765 kb on - strand, within lasT at 609.873 kb on - strand, within lasT at 609.894 kb on + strand, within lasT at 609.894 kb on + strand, within lasT at 609.894 kb on + strand, within lasT at 609.894 kb on + strand, within lasT at 609.895 kb on - strand, within lasT at 609.895 kb on - strand, within lasT at 609.931 kb on - strand, within lasT at 609.955 kb on + strand, within lasT at 609.975 kb on - strand, within lasT at 609.975 kb on - strand, within lasT at 610.052 kb on + strand, within lasT at 610.070 kb on + strand, within lasT at 610.086 kb on + strand, within lasT at 610.086 kb on + strand, within lasT at 610.086 kb on + strand, within lasT at 610.086 kb on + strand, within lasT at 610.087 kb on - strand, within lasT at 610.087 kb on - strand, within lasT at 610.087 kb on - strand, within lasT at 610.092 kb on + strand, within lasT at 610.092 kb on + strand, within lasT at 610.184 kb on - strand, within lasT at 610.339 kb on + strand at 610.339 kb on + strand at 610.339 kb on + strand at 610.340 kb on - strand at 610.340 kb on - strand at 610.340 kb on - strand at 610.340 kb on - strand at 610.431 kb on + strand at 610.456 kb on + strand at 610.457 kb on - strand at 610.457 kb on - strand at 610.501 kb on - strand at 610.501 kb on - strand at 610.521 kb on + strand at 610.589 kb on + strand at 610.589 kb on + strand at 610.589 kb on + strand at 610.595 kb on + strand at 610.595 kb on + strand at 610.646 kb on - strand at 610.650 kb on - strand at 610.694 kb on + strand at 610.694 kb on + strand at 610.696 kb on + strand at 610.696 kb on + strand at 610.810 kb on + strand at 610.825 kb on + strand at 610.826 kb on - strand at 610.870 kb on + strand at 610.874 kb on + strand at 610.874 kb on + strand at 610.902 kb on + strand at 610.902 kb on + strand at 610.940 kb on + strand at 610.940 kb on + strand at 610.957 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 608,697 + thrA NOLOHH_03440 0.76 -5.3 608,810 + thrA NOLOHH_03440 0.80 -1.9 608,821 + thrA NOLOHH_03440 0.81 -4.8 608,821 + thrA NOLOHH_03440 0.81 -2.0 608,821 + thrA NOLOHH_03440 0.81 -3.9 608,822 - thrA NOLOHH_03440 0.81 -2.1 608,822 - thrA NOLOHH_03440 0.81 -5.1 608,886 + thrA NOLOHH_03440 0.83 -2.7 608,975 + thrA NOLOHH_03440 0.87 -3.1 608,975 + thrA NOLOHH_03440 0.87 -1.7 608,975 + thrA NOLOHH_03440 0.87 -2.1 608,975 + thrA NOLOHH_03440 0.87 -3.8 608,976 - thrA NOLOHH_03440 0.87 -6.0 608,976 - thrA NOLOHH_03440 0.87 -2.0 608,976 - thrA NOLOHH_03440 0.87 -1.5 608,976 - thrA NOLOHH_03440 0.87 -2.5 608,976 - thrA NOLOHH_03440 0.87 -4.1 608,976 - thrA NOLOHH_03440 0.87 -5.5 608,997 + thrA NOLOHH_03440 0.88 -1.9 608,997 + thrA NOLOHH_03440 0.88 -4.3 608,997 + thrA NOLOHH_03440 0.88 -4.6 609,276 - -4.8 609,307 - -6.5 609,307 - -2.2 609,375 - -4.9 609,422 - NOLOHH_03445 0.64 -0.4 609,433 + NOLOHH_03445 0.80 -2.5 609,457 - -1.2 609,470 + -4.4 609,485 + -3.3 609,486 - -4.9 609,492 - +1.9 609,552 - -1.4 609,605 + +2.0 609,605 + +0.5 609,605 + -0.8 609,605 + -0.0 609,605 + -1.8 609,605 + -0.5 609,606 - +0.2 609,606 - -1.9 609,606 - +0.8 609,606 - +0.1 609,642 - -0.5 609,645 + -0.5 609,648 + +1.0 609,660 + -0.6 609,670 + -0.8 609,682 + +0.6 609,765 - lasT NOLOHH_03450 0.15 +0.6 609,765 - lasT NOLOHH_03450 0.15 -2.2 609,765 - lasT NOLOHH_03450 0.15 -0.0 609,765 - lasT NOLOHH_03450 0.15 -1.0 609,873 - lasT NOLOHH_03450 0.31 +0.4 609,894 + lasT NOLOHH_03450 0.34 +0.5 609,894 + lasT NOLOHH_03450 0.34 +1.4 609,894 + lasT NOLOHH_03450 0.34 -0.5 609,894 + lasT NOLOHH_03450 0.34 -0.1 609,895 - lasT NOLOHH_03450 0.34 -0.8 609,895 - lasT NOLOHH_03450 0.34 -0.5 609,931 - lasT NOLOHH_03450 0.40 +1.3 609,955 + lasT NOLOHH_03450 0.43 +0.4 609,975 - lasT NOLOHH_03450 0.46 -0.2 609,975 - lasT NOLOHH_03450 0.46 -1.3 610,052 + lasT NOLOHH_03450 0.57 -0.4 610,070 + lasT NOLOHH_03450 0.60 +0.2 610,086 + lasT NOLOHH_03450 0.62 -0.6 610,086 + lasT NOLOHH_03450 0.62 -0.1 610,086 + lasT NOLOHH_03450 0.62 -0.0 610,086 + lasT NOLOHH_03450 0.62 +2.0 610,087 - lasT NOLOHH_03450 0.62 +0.6 610,087 - lasT NOLOHH_03450 0.62 +0.5 610,087 - lasT NOLOHH_03450 0.62 +0.4 610,092 + lasT NOLOHH_03450 0.63 -0.0 610,092 + lasT NOLOHH_03450 0.63 -2.1 610,184 - lasT NOLOHH_03450 0.76 -0.6 610,339 + +0.6 610,339 + +0.3 610,339 + +0.5 610,340 - +0.7 610,340 - +0.4 610,340 - +0.0 610,340 - +0.1 610,431 + -3.4 610,456 + -1.6 610,457 - -2.2 610,457 - +0.7 610,501 - -0.6 610,501 - +1.6 610,521 + +2.0 610,589 + -0.7 610,589 + -0.1 610,589 + +0.5 610,595 + +1.1 610,595 + -1.9 610,646 - +0.3 610,650 - -0.5 610,694 + -0.5 610,694 + +0.2 610,696 + +1.0 610,696 + -0.8 610,810 + -1.6 610,825 + -0.9 610,826 - +2.2 610,870 + +1.2 610,874 + +0.7 610,874 + +2.0 610,902 + +1.3 610,902 + +1.4 610,940 + +1.8 610,940 + +2.3 610,957 + +1.3
Or see this region's nucleotide sequence