Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ykgE and rclR are separated by 526 nucleotides rclR and rclA are separated by 225 nucleotides
NOLOHH_01920: ykgE - Uncharacterized protein YkgE, at 287,967 to 288,686
ykgE
NOLOHH_01925: rclR - DNA-binding transcriptional regulator RclR, at 289,213 to 290,067
rclR
NOLOHH_01930: rclA - reactive chlorine resistance oxidoreductase RclA, at 290,293 to 291,618
rclA
Position (kb) 289
290
291 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 288.233 kb on + strand, within ykgE at 288.233 kb on + strand, within ykgE at 288.234 kb on - strand, within ykgE at 288.234 kb on - strand, within ykgE at 288.272 kb on + strand, within ykgE at 288.315 kb on + strand, within ykgE at 288.316 kb on - strand, within ykgE at 288.316 kb on - strand, within ykgE at 288.316 kb on - strand, within ykgE at 288.316 kb on - strand, within ykgE at 288.339 kb on - strand, within ykgE at 288.344 kb on + strand, within ykgE at 288.344 kb on + strand, within ykgE at 288.345 kb on - strand, within ykgE at 288.366 kb on - strand, within ykgE at 288.419 kb on - strand, within ykgE at 288.442 kb on + strand, within ykgE at 288.443 kb on - strand, within ykgE at 288.443 kb on - strand, within ykgE at 288.467 kb on + strand, within ykgE at 288.468 kb on - strand, within ykgE at 288.535 kb on + strand, within ykgE at 288.690 kb on + strand at 288.701 kb on + strand at 288.701 kb on + strand at 288.702 kb on - strand at 288.758 kb on - strand at 288.758 kb on - strand at 288.793 kb on - strand at 288.793 kb on - strand at 288.793 kb on - strand at 288.793 kb on - strand at 288.913 kb on + strand at 288.947 kb on - strand at 288.947 kb on - strand at 288.947 kb on - strand at 288.986 kb on - strand at 288.986 kb on - strand at 289.307 kb on + strand, within rclR at 289.394 kb on - strand, within rclR at 289.520 kb on - strand, within rclR at 289.520 kb on - strand, within rclR at 289.523 kb on - strand, within rclR at 289.573 kb on - strand, within rclR at 289.618 kb on - strand, within rclR at 289.707 kb on + strand, within rclR at 289.708 kb on - strand, within rclR at 289.708 kb on - strand, within rclR at 289.708 kb on - strand, within rclR at 289.709 kb on + strand, within rclR at 289.709 kb on + strand, within rclR at 289.710 kb on - strand, within rclR at 289.726 kb on - strand, within rclR at 289.810 kb on - strand, within rclR at 289.810 kb on - strand, within rclR at 289.886 kb on - strand, within rclR at 289.886 kb on - strand, within rclR at 289.886 kb on - strand, within rclR at 290.000 kb on - strand at 290.232 kb on - strand at 290.250 kb on - strand at 290.251 kb on + strand at 290.251 kb on + strand at 290.298 kb on + strand at 290.298 kb on + strand at 290.299 kb on - strand at 290.299 kb on - strand at 290.299 kb on - strand at 290.303 kb on - strand at 290.313 kb on + strand at 290.313 kb on + strand at 290.314 kb on - strand at 290.407 kb on + strand at 290.421 kb on + strand at 290.422 kb on - strand at 290.424 kb on + strand at 290.503 kb on - strand, within rclA at 290.530 kb on - strand, within rclA at 290.608 kb on - strand, within rclA at 290.727 kb on - strand, within rclA at 290.728 kb on + strand, within rclA at 290.728 kb on + strand, within rclA at 290.729 kb on - strand, within rclA at 290.749 kb on - strand, within rclA at 290.774 kb on + strand, within rclA at 290.774 kb on + strand, within rclA at 290.774 kb on + strand, within rclA at 290.796 kb on + strand, within rclA at 290.797 kb on - strand, within rclA at 290.817 kb on + strand, within rclA at 290.818 kb on - strand, within rclA at 290.852 kb on + strand, within rclA at 290.904 kb on + strand, within rclA at 291.033 kb on - strand, within rclA at 291.035 kb on + strand, within rclA at 291.035 kb on + strand, within rclA at 291.035 kb on + strand, within rclA at 291.036 kb on - strand, within rclA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 288,233 + ykgE NOLOHH_01920 0.37 -1.7 288,233 + ykgE NOLOHH_01920 0.37 +1.6 288,234 - ykgE NOLOHH_01920 0.37 +0.1 288,234 - ykgE NOLOHH_01920 0.37 -3.4 288,272 + ykgE NOLOHH_01920 0.42 +1.2 288,315 + ykgE NOLOHH_01920 0.48 +0.8 288,316 - ykgE NOLOHH_01920 0.48 -1.6 288,316 - ykgE NOLOHH_01920 0.48 -3.5 288,316 - ykgE NOLOHH_01920 0.48 +1.5 288,316 - ykgE NOLOHH_01920 0.48 -0.2 288,339 - ykgE NOLOHH_01920 0.52 -1.3 288,344 + ykgE NOLOHH_01920 0.52 -0.4 288,344 + ykgE NOLOHH_01920 0.52 -0.3 288,345 - ykgE NOLOHH_01920 0.53 +1.9 288,366 - ykgE NOLOHH_01920 0.55 -1.3 288,419 - ykgE NOLOHH_01920 0.63 +1.0 288,442 + ykgE NOLOHH_01920 0.66 -0.7 288,443 - ykgE NOLOHH_01920 0.66 +0.9 288,443 - ykgE NOLOHH_01920 0.66 +0.6 288,467 + ykgE NOLOHH_01920 0.69 +1.4 288,468 - ykgE NOLOHH_01920 0.70 +0.5 288,535 + ykgE NOLOHH_01920 0.79 -0.5 288,690 + +1.1 288,701 + +2.6 288,701 + +0.3 288,702 - +0.8 288,758 - +0.1 288,758 - +0.8 288,793 - -2.3 288,793 - +1.7 288,793 - +0.1 288,793 - -0.2 288,913 + +0.2 288,947 - +0.8 288,947 - +0.2 288,947 - +1.8 288,986 - -1.1 288,986 - -0.4 289,307 + rclR NOLOHH_01925 0.11 +1.6 289,394 - rclR NOLOHH_01925 0.21 -0.6 289,520 - rclR NOLOHH_01925 0.36 +0.3 289,520 - rclR NOLOHH_01925 0.36 +1.0 289,523 - rclR NOLOHH_01925 0.36 -1.2 289,573 - rclR NOLOHH_01925 0.42 -0.5 289,618 - rclR NOLOHH_01925 0.47 +1.7 289,707 + rclR NOLOHH_01925 0.58 -2.5 289,708 - rclR NOLOHH_01925 0.58 +0.7 289,708 - rclR NOLOHH_01925 0.58 +0.8 289,708 - rclR NOLOHH_01925 0.58 -0.4 289,709 + rclR NOLOHH_01925 0.58 -0.8 289,709 + rclR NOLOHH_01925 0.58 -1.1 289,710 - rclR NOLOHH_01925 0.58 +0.4 289,726 - rclR NOLOHH_01925 0.60 +2.8 289,810 - rclR NOLOHH_01925 0.70 +0.6 289,810 - rclR NOLOHH_01925 0.70 -0.2 289,886 - rclR NOLOHH_01925 0.79 -0.3 289,886 - rclR NOLOHH_01925 0.79 +0.6 289,886 - rclR NOLOHH_01925 0.79 +0.5 290,000 - -0.3 290,232 - -1.9 290,250 - -1.2 290,251 + -1.1 290,251 + +0.4 290,298 + -1.0 290,298 + -0.7 290,299 - -3.8 290,299 - -0.1 290,299 - +0.3 290,303 - -0.8 290,313 + +0.9 290,313 + +1.9 290,314 - +1.2 290,407 + -1.2 290,421 + +1.7 290,422 - -1.4 290,424 + +0.9 290,503 - rclA NOLOHH_01930 0.16 -0.6 290,530 - rclA NOLOHH_01930 0.18 -0.7 290,608 - rclA NOLOHH_01930 0.24 -2.3 290,727 - rclA NOLOHH_01930 0.33 +0.2 290,728 + rclA NOLOHH_01930 0.33 +0.6 290,728 + rclA NOLOHH_01930 0.33 -1.5 290,729 - rclA NOLOHH_01930 0.33 +0.0 290,749 - rclA NOLOHH_01930 0.34 +1.0 290,774 + rclA NOLOHH_01930 0.36 +0.2 290,774 + rclA NOLOHH_01930 0.36 -1.7 290,774 + rclA NOLOHH_01930 0.36 +0.2 290,796 + rclA NOLOHH_01930 0.38 +1.0 290,797 - rclA NOLOHH_01930 0.38 +3.3 290,817 + rclA NOLOHH_01930 0.40 -1.1 290,818 - rclA NOLOHH_01930 0.40 -1.4 290,852 + rclA NOLOHH_01930 0.42 -0.5 290,904 + rclA NOLOHH_01930 0.46 -2.8 291,033 - rclA NOLOHH_01930 0.56 -3.3 291,035 + rclA NOLOHH_01930 0.56 -0.3 291,035 + rclA NOLOHH_01930 0.56 -1.7 291,035 + rclA NOLOHH_01930 0.56 -2.1 291,036 - rclA NOLOHH_01930 0.56 -3.4
Or see this region's nucleotide sequence