Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybbO and cnoX are separated by 60 nucleotides cnoX and fetB are separated by 62 nucleotides fetB and fetA overlap by 14 nucleotides fetA and qmcA are separated by 145 nucleotides
NOLOHH_00970: ybbO - NADP(+)-dependent aldehyde reductase, at 83,852 to 84,622
ybbO
NOLOHH_00975: cnoX - chaperedoxin, at 84,683 to 85,537
cnoX
NOLOHH_00980: fetB - iron export ABC transporter permease subunit FetB, at 85,600 to 86,379
fetB
NOLOHH_00985: fetA - iron ABC transporter ATP-binding protein FetA, at 86,366 to 87,043
fetA
NOLOHH_00990: qmcA - Protein QmcA, at 87,189 to 88,106
qmcA
Position (kb) 85
86
87 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 84.609 kb on + strand at 84.610 kb on - strand at 84.719 kb on - strand at 84.767 kb on + strand at 84.836 kb on + strand, within cnoX at 84.836 kb on + strand, within cnoX at 84.836 kb on + strand, within cnoX at 84.836 kb on + strand, within cnoX at 84.837 kb on - strand, within cnoX at 84.926 kb on + strand, within cnoX at 84.927 kb on - strand, within cnoX at 85.070 kb on + strand, within cnoX at 85.414 kb on + strand, within cnoX at 85.505 kb on + strand at 85.520 kb on + strand at 85.520 kb on + strand at 85.520 kb on + strand at 85.521 kb on - strand at 85.521 kb on - strand at 85.521 kb on - strand at 85.532 kb on + strand at 85.532 kb on + strand at 85.532 kb on + strand at 85.532 kb on + strand at 85.533 kb on - strand at 85.533 kb on - strand at 85.533 kb on - strand at 85.538 kb on + strand at 85.645 kb on - strand at 85.647 kb on - strand at 85.654 kb on - strand at 85.659 kb on - strand at 85.668 kb on - strand at 85.711 kb on - strand, within fetB at 85.711 kb on - strand, within fetB at 85.711 kb on - strand, within fetB at 85.723 kb on - strand, within fetB at 85.731 kb on - strand, within fetB at 85.735 kb on - strand, within fetB at 85.765 kb on + strand, within fetB at 85.798 kb on + strand, within fetB at 85.835 kb on - strand, within fetB at 85.835 kb on - strand, within fetB at 85.945 kb on + strand, within fetB at 85.955 kb on + strand, within fetB at 86.119 kb on - strand, within fetB at 86.121 kb on - strand, within fetB at 86.121 kb on - strand, within fetB at 86.168 kb on - strand, within fetB at 86.179 kb on + strand, within fetB at 86.214 kb on - strand, within fetB at 86.236 kb on - strand, within fetB at 86.362 kb on - strand at 86.365 kb on - strand at 86.521 kb on + strand, within fetA at 86.528 kb on - strand, within fetA at 86.531 kb on - strand, within fetA at 86.752 kb on - strand, within fetA at 86.902 kb on + strand, within fetA at 86.902 kb on + strand, within fetA at 86.903 kb on - strand, within fetA at 86.934 kb on - strand, within fetA at 86.934 kb on - strand, within fetA at 86.939 kb on - strand, within fetA at 86.939 kb on - strand, within fetA at 86.975 kb on - strand, within fetA at 87.127 kb on + strand at 87.128 kb on - strand at 87.280 kb on + strand at 87.342 kb on - strand, within qmcA at 87.369 kb on - strand, within qmcA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 84,609 + -0.1 84,610 - -0.5 84,719 - +0.1 84,767 + -0.6 84,836 + cnoX NOLOHH_00975 0.18 -0.4 84,836 + cnoX NOLOHH_00975 0.18 -1.7 84,836 + cnoX NOLOHH_00975 0.18 -2.8 84,836 + cnoX NOLOHH_00975 0.18 +1.0 84,837 - cnoX NOLOHH_00975 0.18 +0.7 84,926 + cnoX NOLOHH_00975 0.28 -0.1 84,927 - cnoX NOLOHH_00975 0.29 -1.3 85,070 + cnoX NOLOHH_00975 0.45 +0.3 85,414 + cnoX NOLOHH_00975 0.85 +0.4 85,505 + +0.5 85,520 + -0.1 85,520 + +0.8 85,520 + -1.6 85,521 - -0.6 85,521 - -0.1 85,521 - -3.2 85,532 + +0.0 85,532 + -0.3 85,532 + +0.4 85,532 + +0.2 85,533 - -1.0 85,533 - +0.2 85,533 - +0.5 85,538 + -0.0 85,645 - -1.8 85,647 - -3.4 85,654 - +0.9 85,659 - +0.1 85,668 - +1.0 85,711 - fetB NOLOHH_00980 0.14 -1.5 85,711 - fetB NOLOHH_00980 0.14 -3.0 85,711 - fetB NOLOHH_00980 0.14 -0.0 85,723 - fetB NOLOHH_00980 0.16 -0.4 85,731 - fetB NOLOHH_00980 0.17 -0.5 85,735 - fetB NOLOHH_00980 0.17 -4.0 85,765 + fetB NOLOHH_00980 0.21 -0.2 85,798 + fetB NOLOHH_00980 0.25 -0.2 85,835 - fetB NOLOHH_00980 0.30 +1.2 85,835 - fetB NOLOHH_00980 0.30 +1.4 85,945 + fetB NOLOHH_00980 0.44 +1.6 85,955 + fetB NOLOHH_00980 0.46 +0.8 86,119 - fetB NOLOHH_00980 0.67 -2.6 86,121 - fetB NOLOHH_00980 0.67 -0.1 86,121 - fetB NOLOHH_00980 0.67 +0.3 86,168 - fetB NOLOHH_00980 0.73 -2.1 86,179 + fetB NOLOHH_00980 0.74 -2.2 86,214 - fetB NOLOHH_00980 0.79 -1.0 86,236 - fetB NOLOHH_00980 0.82 -1.6 86,362 - +2.2 86,365 - +0.6 86,521 + fetA NOLOHH_00985 0.23 +1.6 86,528 - fetA NOLOHH_00985 0.24 -0.6 86,531 - fetA NOLOHH_00985 0.24 -2.7 86,752 - fetA NOLOHH_00985 0.57 +0.9 86,902 + fetA NOLOHH_00985 0.79 +1.6 86,902 + fetA NOLOHH_00985 0.79 -3.3 86,903 - fetA NOLOHH_00985 0.79 -0.2 86,934 - fetA NOLOHH_00985 0.84 +0.9 86,934 - fetA NOLOHH_00985 0.84 -1.0 86,939 - fetA NOLOHH_00985 0.85 -0.1 86,939 - fetA NOLOHH_00985 0.85 -0.6 86,975 - fetA NOLOHH_00985 0.90 +0.9 87,127 + -0.0 87,128 - -0.8 87,280 + -0.1 87,342 - qmcA NOLOHH_00990 0.17 +0.7 87,369 - qmcA NOLOHH_00990 0.20 +0.2
Or see this region's nucleotide sequence