Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_00395 and NOLOHH_00400 are separated by 596 nucleotides NOLOHH_00400 and hipB are separated by 14 nucleotides hipB and NOLOHH_00410 overlap by 20 nucleotides
NOLOHH_00395: NOLOHH_00395 - molecular chaperone DnaJ, at 23,681 to 24,196
_00395
NOLOHH_00400: NOLOHH_00400 - DNA-binding protein, at 24,793 to 25,119
_00400
NOLOHH_00405: hipB - XRE family transcriptional regulator, at 25,134 to 25,415
hipB
NOLOHH_00410: NOLOHH_00410 - type II toxin-antitoxin system RelE/ParE family toxin, at 25,396 to 25,725
_00410
Position (kb) 24
25
26 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 23.840 kb on - strand, within NOLOHH_00395 at 23.867 kb on - strand, within NOLOHH_00395 at 23.945 kb on - strand, within NOLOHH_00395 at 23.974 kb on - strand, within NOLOHH_00395 at 24.103 kb on - strand, within NOLOHH_00395 at 24.124 kb on - strand, within NOLOHH_00395 at 24.177 kb on - strand at 24.296 kb on - strand at 24.376 kb on + strand at 24.376 kb on + strand at 24.377 kb on - strand at 24.380 kb on + strand at 24.380 kb on + strand at 24.381 kb on - strand at 24.437 kb on - strand at 24.437 kb on - strand at 24.526 kb on + strand at 24.581 kb on - strand at 24.581 kb on - strand at 24.581 kb on - strand at 24.581 kb on - strand at 24.581 kb on - strand at 24.585 kb on + strand at 24.586 kb on - strand at 24.591 kb on + strand at 24.592 kb on - strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.608 kb on - strand at 24.608 kb on - strand at 24.608 kb on - strand at 24.613 kb on + strand at 24.614 kb on - strand at 24.626 kb on + strand at 24.626 kb on + strand at 24.626 kb on + strand at 24.626 kb on + strand at 24.627 kb on - strand at 24.627 kb on - strand at 24.627 kb on - strand at 24.627 kb on - strand at 24.631 kb on + strand at 24.703 kb on - strand at 24.703 kb on - strand at 24.706 kb on + strand at 24.794 kb on + strand at 24.794 kb on + strand at 24.795 kb on - strand at 24.795 kb on - strand at 24.840 kb on + strand, within NOLOHH_00400 at 24.840 kb on + strand, within NOLOHH_00400 at 24.840 kb on + strand, within NOLOHH_00400 at 24.840 kb on + strand, within NOLOHH_00400 at 24.841 kb on - strand, within NOLOHH_00400 at 24.841 kb on - strand, within NOLOHH_00400 at 24.841 kb on - strand, within NOLOHH_00400 at 24.841 kb on - strand, within NOLOHH_00400 at 24.841 kb on - strand, within NOLOHH_00400 at 24.841 kb on - strand, within NOLOHH_00400 at 24.871 kb on - strand, within NOLOHH_00400 at 24.894 kb on - strand, within NOLOHH_00400 at 24.897 kb on + strand, within NOLOHH_00400 at 24.897 kb on + strand, within NOLOHH_00400 at 24.898 kb on - strand, within NOLOHH_00400 at 24.898 kb on - strand, within NOLOHH_00400 at 24.959 kb on - strand, within NOLOHH_00400 at 24.959 kb on - strand, within NOLOHH_00400 at 24.967 kb on + strand, within NOLOHH_00400 at 24.968 kb on - strand, within NOLOHH_00400 at 24.968 kb on - strand, within NOLOHH_00400 at 24.968 kb on - strand, within NOLOHH_00400 at 24.988 kb on + strand, within NOLOHH_00400 at 24.989 kb on - strand, within NOLOHH_00400 at 25.006 kb on + strand, within NOLOHH_00400 at 25.006 kb on + strand, within NOLOHH_00400 at 25.006 kb on + strand, within NOLOHH_00400 at 25.007 kb on - strand, within NOLOHH_00400 at 25.007 kb on - strand, within NOLOHH_00400 at 25.031 kb on + strand, within NOLOHH_00400 at 25.031 kb on + strand, within NOLOHH_00400 at 25.032 kb on - strand, within NOLOHH_00400 at 25.104 kb on - strand at 25.104 kb on - strand at 25.138 kb on + strand at 25.248 kb on - strand, within hipB at 25.500 kb on + strand, within NOLOHH_00410 at 25.501 kb on - strand, within NOLOHH_00410 at 25.501 kb on - strand, within NOLOHH_00410 at 25.501 kb on - strand, within NOLOHH_00410 at 25.506 kb on + strand, within NOLOHH_00410 at 25.506 kb on + strand, within NOLOHH_00410 at 25.507 kb on - strand, within NOLOHH_00410 at 25.507 kb on - strand, within NOLOHH_00410 at 25.507 kb on - strand, within NOLOHH_00410 at 25.507 kb on - strand, within NOLOHH_00410 at 25.526 kb on - strand, within NOLOHH_00410 at 25.613 kb on - strand, within NOLOHH_00410 at 25.625 kb on + strand, within NOLOHH_00410 at 25.625 kb on + strand, within NOLOHH_00410 at 25.625 kb on + strand, within NOLOHH_00410 at 25.626 kb on - strand, within NOLOHH_00410 at 25.626 kb on - strand, within NOLOHH_00410 at 25.626 kb on - strand, within NOLOHH_00410 at 25.789 kb on + strand at 25.795 kb on - strand at 25.800 kb on - strand at 25.820 kb on + strand at 25.821 kb on - strand at 25.821 kb on - strand at 25.821 kb on - strand at 25.821 kb on - strand at 25.821 kb on - strand at 25.821 kb on - strand at 25.821 kb on - strand at 25.821 kb on - strand at 25.821 kb on - strand at 25.821 kb on - strand at 25.821 kb on - strand at 25.866 kb on + strand at 25.867 kb on - strand at 25.867 kb on - strand at 25.867 kb on - strand at 25.867 kb on - strand at 25.867 kb on - strand at 25.867 kb on - strand at 25.867 kb on - strand at 25.870 kb on + strand at 25.871 kb on - strand at 25.871 kb on - strand at 25.871 kb on - strand at 25.871 kb on - strand at 25.882 kb on + strand at 26.004 kb on - strand at 26.074 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 23,840 - NOLOHH_00395 0.31 +1.7 23,867 - NOLOHH_00395 0.36 +0.1 23,945 - NOLOHH_00395 0.51 +1.1 23,974 - NOLOHH_00395 0.57 +0.1 24,103 - NOLOHH_00395 0.82 +0.2 24,124 - NOLOHH_00395 0.86 -1.1 24,177 - +0.6 24,296 - -0.0 24,376 + +1.0 24,376 + -0.7 24,377 - -0.3 24,380 + +0.9 24,380 + -0.3 24,381 - -0.6 24,437 - +0.3 24,437 - -0.6 24,526 + +0.3 24,581 - +0.4 24,581 - +0.6 24,581 - +0.2 24,581 - -0.3 24,581 - +1.6 24,585 + -0.9 24,586 - -0.2 24,591 + -0.6 24,592 - +0.1 24,596 + +1.2 24,596 + -0.0 24,596 + -0.7 24,596 + +1.4 24,596 + +0.6 24,596 + -1.1 24,596 + +0.4 24,597 - -0.3 24,597 - -1.0 24,597 - +0.1 24,597 - +0.9 24,597 - +0.3 24,597 - +0.3 24,597 - +1.4 24,597 - +0.3 24,597 - -1.3 24,597 - +0.6 24,597 - -0.0 24,597 - +0.3 24,597 - +0.9 24,597 - -0.0 24,597 - +0.1 24,602 + +0.4 24,602 + -0.1 24,602 + +1.2 24,602 + +0.9 24,602 + -1.0 24,602 + -0.5 24,602 + -0.3 24,602 + +1.1 24,603 - +0.8 24,603 - -0.4 24,603 - -0.1 24,603 - -0.2 24,603 - +0.4 24,603 - -3.5 24,603 - +0.4 24,603 - +0.2 24,603 - -0.3 24,603 - -0.6 24,603 - +0.0 24,603 - -0.0 24,603 - +0.6 24,603 - -0.3 24,608 - +0.7 24,608 - +0.0 24,608 - -0.5 24,613 + +1.0 24,614 - -0.8 24,626 + -0.3 24,626 + -0.3 24,626 + +0.7 24,626 + -0.2 24,627 - -0.4 24,627 - -0.4 24,627 - -1.2 24,627 - +0.5 24,631 + +0.3 24,703 - -0.1 24,703 - +0.8 24,706 + +0.8 24,794 + -0.3 24,794 + -0.2 24,795 - -0.8 24,795 - +0.8 24,840 + NOLOHH_00400 0.14 +0.2 24,840 + NOLOHH_00400 0.14 +0.9 24,840 + NOLOHH_00400 0.14 -0.7 24,840 + NOLOHH_00400 0.14 +0.0 24,841 - NOLOHH_00400 0.15 -0.3 24,841 - NOLOHH_00400 0.15 -0.9 24,841 - NOLOHH_00400 0.15 -0.7 24,841 - NOLOHH_00400 0.15 -0.5 24,841 - NOLOHH_00400 0.15 +0.3 24,841 - NOLOHH_00400 0.15 +0.3 24,871 - NOLOHH_00400 0.24 -0.3 24,894 - NOLOHH_00400 0.31 +0.2 24,897 + NOLOHH_00400 0.32 +0.6 24,897 + NOLOHH_00400 0.32 -1.3 24,898 - NOLOHH_00400 0.32 -0.9 24,898 - NOLOHH_00400 0.32 -0.6 24,959 - NOLOHH_00400 0.51 -1.8 24,959 - NOLOHH_00400 0.51 +0.6 24,967 + NOLOHH_00400 0.53 +1.2 24,968 - NOLOHH_00400 0.54 -4.8 24,968 - NOLOHH_00400 0.54 +0.8 24,968 - NOLOHH_00400 0.54 +0.5 24,988 + NOLOHH_00400 0.60 +0.9 24,989 - NOLOHH_00400 0.60 +0.3 25,006 + NOLOHH_00400 0.65 +1.0 25,006 + NOLOHH_00400 0.65 +1.6 25,006 + NOLOHH_00400 0.65 +0.7 25,007 - NOLOHH_00400 0.65 -0.2 25,007 - NOLOHH_00400 0.65 -1.5 25,031 + NOLOHH_00400 0.73 -0.8 25,031 + NOLOHH_00400 0.73 -0.1 25,032 - NOLOHH_00400 0.73 +0.5 25,104 - +0.9 25,104 - +0.6 25,138 + -1.8 25,248 - hipB NOLOHH_00405 0.40 -3.2 25,500 + NOLOHH_00410 0.32 -1.2 25,501 - NOLOHH_00410 0.32 -0.0 25,501 - NOLOHH_00410 0.32 +0.8 25,501 - NOLOHH_00410 0.32 -1.2 25,506 + NOLOHH_00410 0.33 +0.5 25,506 + NOLOHH_00410 0.33 -3.7 25,507 - NOLOHH_00410 0.34 +0.5 25,507 - NOLOHH_00410 0.34 -0.4 25,507 - NOLOHH_00410 0.34 +0.1 25,507 - NOLOHH_00410 0.34 +0.5 25,526 - NOLOHH_00410 0.39 +0.4 25,613 - NOLOHH_00410 0.66 -0.3 25,625 + NOLOHH_00410 0.69 -0.2 25,625 + NOLOHH_00410 0.69 -0.3 25,625 + NOLOHH_00410 0.69 +0.5 25,626 - NOLOHH_00410 0.70 -1.8 25,626 - NOLOHH_00410 0.70 +0.3 25,626 - NOLOHH_00410 0.70 +0.6 25,789 + +0.6 25,795 - -1.5 25,800 - +0.2 25,820 + +0.5 25,821 - +0.8 25,821 - -0.1 25,821 - +0.5 25,821 - +0.5 25,821 - +0.0 25,821 - +0.9 25,821 - +0.9 25,821 - +1.4 25,821 - +0.6 25,821 - +0.4 25,821 - +0.0 25,866 + -0.5 25,867 - -2.2 25,867 - -2.3 25,867 - -5.3 25,867 - -2.0 25,867 - -2.9 25,867 - -5.1 25,867 - -4.6 25,870 + +1.3 25,871 - -2.2 25,871 - -1.4 25,871 - -0.1 25,871 - -1.5 25,882 + +0.5 26,004 - -0.7 26,074 - -0.6
Or see this region's nucleotide sequence