Strain Fitness in Erwinia amylovora T8 around OLJFJH_17565

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_17555 and OLJFJH_17560 overlap by 10 nucleotidesOLJFJH_17560 and OLJFJH_17565 overlap by 1 nucleotidesOLJFJH_17565 and OLJFJH_17570 are separated by 14 nucleotidesOLJFJH_17570 and OLJFJH_17575 overlap by 1 nucleotidesOLJFJH_17575 and OLJFJH_17580 are separated by 103 nucleotides OLJFJH_17555: OLJFJH_17555 - host cell division inhibitor Icd-like protein, at 3,700,090 to 3,700,986 _17555 OLJFJH_17560: OLJFJH_17560 - DUF4222 domain-containing protein, at 3,700,977 to 3,701,150 _17560 OLJFJH_17565: OLJFJH_17565 - Uncharacterized protein HI1418, at 3,701,150 to 3,701,737 _17565 OLJFJH_17570: OLJFJH_17570 - hypothetical protein, at 3,701,752 to 3,702,171 _17570 OLJFJH_17575: OLJFJH_17575 - AlpA family transcriptional regulator, at 3,702,171 to 3,702,368 _17575 OLJFJH_17580: OLJFJH_17580 - protein kinase, at 3,702,472 to 3,703,239 _17580 Position (kb) 3701 3702Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 3700.314 kb on + strand, within OLJFJH_17555at 3700.315 kb on - strand, within OLJFJH_17555at 3700.315 kb on - strand, within OLJFJH_17555at 3700.315 kb on - strand, within OLJFJH_17555at 3700.315 kb on - strand, within OLJFJH_17555at 3700.338 kb on + strand, within OLJFJH_17555at 3700.380 kb on + strand, within OLJFJH_17555at 3700.381 kb on - strand, within OLJFJH_17555at 3700.429 kb on - strand, within OLJFJH_17555at 3700.431 kb on + strand, within OLJFJH_17555at 3700.447 kb on + strand, within OLJFJH_17555at 3700.447 kb on + strand, within OLJFJH_17555at 3700.450 kb on + strand, within OLJFJH_17555at 3700.451 kb on - strand, within OLJFJH_17555at 3700.451 kb on - strand, within OLJFJH_17555at 3700.451 kb on - strand, within OLJFJH_17555at 3700.451 kb on - strand, within OLJFJH_17555at 3700.732 kb on - strand, within OLJFJH_17555at 3700.799 kb on - strand, within OLJFJH_17555at 3700.930 kb on + strandat 3701.179 kb on - strandat 3701.183 kb on - strandat 3701.437 kb on - strand, within OLJFJH_17565at 3701.466 kb on - strand, within OLJFJH_17565at 3701.474 kb on - strand, within OLJFJH_17565at 3701.485 kb on + strand, within OLJFJH_17565at 3701.538 kb on - strand, within OLJFJH_17565at 3701.645 kb on - strand, within OLJFJH_17565at 3701.767 kb on + strandat 3701.780 kb on - strandat 3701.969 kb on - strand, within OLJFJH_17570at 3702.016 kb on + strand, within OLJFJH_17570at 3702.057 kb on + strand, within OLJFJH_17570at 3702.058 kb on - strand, within OLJFJH_17570at 3702.058 kb on - strand, within OLJFJH_17570at 3702.058 kb on - strand, within OLJFJH_17570at 3702.058 kb on - strand, within OLJFJH_17570at 3702.059 kb on + strand, within OLJFJH_17570at 3702.060 kb on - strand, within OLJFJH_17570at 3702.060 kb on - strand, within OLJFJH_17570at 3702.060 kb on - strand, within OLJFJH_17570at 3702.060 kb on - strand, within OLJFJH_17570at 3702.060 kb on - strand, within OLJFJH_17570at 3702.060 kb on - strand, within OLJFJH_17570at 3702.062 kb on - strand, within OLJFJH_17570at 3702.398 kb on + strandat 3702.421 kb on + strandat 3702.421 kb on + strandat 3702.422 kb on - strandat 3702.426 kb on + strandat 3702.560 kb on - strand, within OLJFJH_17580at 3702.685 kb on + strand, within OLJFJH_17580at 3702.686 kb on - strand, within OLJFJH_17580

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
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3,700,314 + OLJFJH_17555 0.25 +1.2
3,700,315 - OLJFJH_17555 0.25 -0.6
3,700,315 - OLJFJH_17555 0.25 +0.8
3,700,315 - OLJFJH_17555 0.25 +0.3
3,700,315 - OLJFJH_17555 0.25 +0.7
3,700,338 + OLJFJH_17555 0.28 +0.1
3,700,380 + OLJFJH_17555 0.32 +0.3
3,700,381 - OLJFJH_17555 0.32 -0.4
3,700,429 - OLJFJH_17555 0.38 -0.5
3,700,431 + OLJFJH_17555 0.38 +4.3
3,700,447 + OLJFJH_17555 0.40 -0.6
3,700,447 + OLJFJH_17555 0.40 +0.8
3,700,450 + OLJFJH_17555 0.40 +0.3
3,700,451 - OLJFJH_17555 0.40 -0.7
3,700,451 - OLJFJH_17555 0.40 +1.1
3,700,451 - OLJFJH_17555 0.40 -0.6
3,700,451 - OLJFJH_17555 0.40 -0.8
3,700,732 - OLJFJH_17555 0.72 -1.1
3,700,799 - OLJFJH_17555 0.79 -0.2
3,700,930 + +0.7
3,701,179 - -0.1
3,701,183 - +0.4
3,701,437 - OLJFJH_17565 0.49 +6.3
3,701,466 - OLJFJH_17565 0.54 +0.3
3,701,474 - OLJFJH_17565 0.55 -0.3
3,701,485 + OLJFJH_17565 0.57 +2.5
3,701,538 - OLJFJH_17565 0.66 -0.5
3,701,645 - OLJFJH_17565 0.84 -0.2
3,701,767 + +0.8
3,701,780 - -2.0
3,701,969 - OLJFJH_17570 0.52 +0.7
3,702,016 + OLJFJH_17570 0.63 -0.3
3,702,057 + OLJFJH_17570 0.73 +1.6
3,702,058 - OLJFJH_17570 0.73 -0.6
3,702,058 - OLJFJH_17570 0.73 +3.9
3,702,058 - OLJFJH_17570 0.73 +2.3
3,702,058 - OLJFJH_17570 0.73 -2.5
3,702,059 + OLJFJH_17570 0.73 +0.2
3,702,060 - OLJFJH_17570 0.73 +0.5
3,702,060 - OLJFJH_17570 0.73 +1.0
3,702,060 - OLJFJH_17570 0.73 +1.3
3,702,060 - OLJFJH_17570 0.73 -0.6
3,702,060 - OLJFJH_17570 0.73 -0.4
3,702,060 - OLJFJH_17570 0.73 +0.2
3,702,062 - OLJFJH_17570 0.74 +0.8
3,702,398 + -0.1
3,702,421 + -0.1
3,702,421 + +0.5
3,702,422 - +0.1
3,702,426 + -0.4
3,702,560 - OLJFJH_17580 0.11 -1.1
3,702,685 + OLJFJH_17580 0.28 +0.0
3,702,686 - OLJFJH_17580 0.28 +0.1

Or see this region's nucleotide sequence