Strain Fitness in Erwinia amylovora T8 around OLJFJH_17190

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_17180 and OLJFJH_17185 are separated by 0 nucleotidesOLJFJH_17185 and OLJFJH_17190 are separated by 169 nucleotidesOLJFJH_17190 and OLJFJH_17195 are separated by 216 nucleotides OLJFJH_17180: OLJFJH_17180 - glutamate/aspartate ABC transporter permease GltK, at 3,627,138 to 3,627,815 _17180 OLJFJH_17185: OLJFJH_17185 - arginine transporter ATP-binding subunit, at 3,627,816 to 3,628,541 _17185 OLJFJH_17190: OLJFJH_17190 - zinc ribbon-containing protein, at 3,628,711 to 3,629,193 _17190 OLJFJH_17195: OLJFJH_17195 - leucine--tRNA ligase, at 3,629,410 to 3,631,992 _17195 Position (kb) 3628 3629 3630Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 3627.789 kb on + strandat 3627.789 kb on + strandat 3627.793 kb on + strandat 3627.840 kb on - strandat 3627.847 kb on - strandat 3628.039 kb on + strand, within OLJFJH_17185at 3628.039 kb on + strand, within OLJFJH_17185at 3628.040 kb on - strand, within OLJFJH_17185at 3628.040 kb on - strand, within OLJFJH_17185at 3628.052 kb on - strand, within OLJFJH_17185at 3628.052 kb on - strand, within OLJFJH_17185at 3628.129 kb on + strand, within OLJFJH_17185at 3628.130 kb on - strand, within OLJFJH_17185at 3628.130 kb on - strand, within OLJFJH_17185at 3628.130 kb on - strand, within OLJFJH_17185at 3628.490 kb on + strandat 3628.539 kb on + strandat 3628.539 kb on + strandat 3628.540 kb on - strandat 3628.540 kb on - strandat 3628.583 kb on - strandat 3628.593 kb on - strandat 3628.678 kb on + strandat 3628.678 kb on + strandat 3628.678 kb on + strandat 3628.679 kb on - strandat 3628.679 kb on - strandat 3628.679 kb on - strandat 3628.679 kb on - strandat 3628.679 kb on - strandat 3628.679 kb on - strandat 3628.679 kb on - strandat 3628.734 kb on + strandat 3628.784 kb on + strand, within OLJFJH_17190at 3628.785 kb on - strand, within OLJFJH_17190at 3628.854 kb on - strand, within OLJFJH_17190at 3628.995 kb on + strand, within OLJFJH_17190at 3628.997 kb on + strand, within OLJFJH_17190at 3628.998 kb on - strand, within OLJFJH_17190at 3628.998 kb on - strand, within OLJFJH_17190at 3628.998 kb on - strand, within OLJFJH_17190at 3629.065 kb on + strand, within OLJFJH_17190at 3629.066 kb on - strand, within OLJFJH_17190at 3629.085 kb on + strand, within OLJFJH_17190at 3629.175 kb on - strandat 3629.227 kb on - strandat 3629.272 kb on + strandat 3629.273 kb on - strandat 3629.296 kb on - strandat 3629.358 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
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3,627,789 + -1.0
3,627,789 + -0.9
3,627,793 + +0.1
3,627,840 - -0.2
3,627,847 - -1.1
3,628,039 + OLJFJH_17185 0.31 -0.7
3,628,039 + OLJFJH_17185 0.31 +0.9
3,628,040 - OLJFJH_17185 0.31 +1.8
3,628,040 - OLJFJH_17185 0.31 -0.4
3,628,052 - OLJFJH_17185 0.33 -0.3
3,628,052 - OLJFJH_17185 0.33 -1.4
3,628,129 + OLJFJH_17185 0.43 +4.7
3,628,130 - OLJFJH_17185 0.43 +1.3
3,628,130 - OLJFJH_17185 0.43 +0.2
3,628,130 - OLJFJH_17185 0.43 +0.9
3,628,490 + -0.5
3,628,539 + +0.5
3,628,539 + -0.0
3,628,540 - -0.6
3,628,540 - +0.7
3,628,583 - +0.3
3,628,593 - -0.2
3,628,678 + -0.1
3,628,678 + -0.1
3,628,678 + -0.8
3,628,679 - +1.4
3,628,679 - +0.6
3,628,679 - +0.4
3,628,679 - +0.3
3,628,679 - +2.5
3,628,679 - +0.2
3,628,679 - +2.1
3,628,734 + -0.9
3,628,784 + OLJFJH_17190 0.15 +0.2
3,628,785 - OLJFJH_17190 0.15 +0.2
3,628,854 - OLJFJH_17190 0.30 +6.9
3,628,995 + OLJFJH_17190 0.59 -0.3
3,628,997 + OLJFJH_17190 0.59 +0.5
3,628,998 - OLJFJH_17190 0.59 -0.1
3,628,998 - OLJFJH_17190 0.59 +0.4
3,628,998 - OLJFJH_17190 0.59 -1.1
3,629,065 + OLJFJH_17190 0.73 +3.7
3,629,066 - OLJFJH_17190 0.73 -0.5
3,629,085 + OLJFJH_17190 0.77 -0.4
3,629,175 - -0.0
3,629,227 - -1.5
3,629,272 + -0.4
3,629,273 - -2.5
3,629,296 - +0.1
3,629,358 + -0.0

Or see this region's nucleotide sequence