Strain Fitness in Erwinia amylovora T8 around OLJFJH_15765

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_15755 and OLJFJH_15760 are separated by 1 nucleotidesOLJFJH_15760 and OLJFJH_15765 are separated by 209 nucleotidesOLJFJH_15765 and OLJFJH_15770 are separated by 470 nucleotidesOLJFJH_15770 and OLJFJH_15775 are separated by 12 nucleotidesOLJFJH_15775 and OLJFJH_15780 are separated by 72 nucleotidesOLJFJH_15780 and OLJFJH_15785 are separated by 165 nucleotides OLJFJH_15755: OLJFJH_15755 - MFS transporter, at 3,321,285 to 3,322,970 _15755 OLJFJH_15760: OLJFJH_15760 - MarR family transcriptional regulator, at 3,322,972 to 3,323,403 _15760 OLJFJH_15765: OLJFJH_15765 - transposase, at 3,323,613 to 3,324,524 _15765 OLJFJH_15770: OLJFJH_15770 - tRNA-Leu, at 3,324,995 to 3,325,080 _15770 OLJFJH_15775: OLJFJH_15775 - tRNA-Cys, at 3,325,093 to 3,325,166 _15775 OLJFJH_15780: OLJFJH_15780 - tRNA-Gly, at 3,325,239 to 3,325,314 _15780 OLJFJH_15785: OLJFJH_15785 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 3,325,480 to 3,326,058 _15785 Position (kb) 3323 3324 3325Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3322.633 kb on + strand, within OLJFJH_15755at 3322.633 kb on + strand, within OLJFJH_15755at 3322.634 kb on - strand, within OLJFJH_15755at 3322.634 kb on - strand, within OLJFJH_15755at 3322.673 kb on - strand, within OLJFJH_15755at 3322.726 kb on + strand, within OLJFJH_15755at 3322.726 kb on + strand, within OLJFJH_15755at 3322.726 kb on + strand, within OLJFJH_15755at 3322.726 kb on + strand, within OLJFJH_15755at 3322.726 kb on + strand, within OLJFJH_15755at 3322.726 kb on + strand, within OLJFJH_15755at 3322.726 kb on + strand, within OLJFJH_15755at 3322.726 kb on + strand, within OLJFJH_15755at 3322.726 kb on + strand, within OLJFJH_15755at 3322.726 kb on + strand, within OLJFJH_15755at 3322.727 kb on - strand, within OLJFJH_15755at 3322.727 kb on - strand, within OLJFJH_15755at 3322.727 kb on - strand, within OLJFJH_15755at 3322.727 kb on - strand, within OLJFJH_15755at 3322.727 kb on - strand, within OLJFJH_15755at 3322.727 kb on - strand, within OLJFJH_15755at 3322.729 kb on - strand, within OLJFJH_15755at 3322.759 kb on + strand, within OLJFJH_15755at 3322.945 kb on + strandat 3323.204 kb on - strand, within OLJFJH_15760at 3323.304 kb on + strand, within OLJFJH_15760at 3323.307 kb on + strand, within OLJFJH_15760at 3323.335 kb on + strand, within OLJFJH_15760at 3323.406 kb on + strandat 3323.407 kb on - strandat 3323.422 kb on - strandat 3323.422 kb on - strandat 3323.424 kb on + strandat 3323.424 kb on + strandat 3323.433 kb on - strandat 3323.436 kb on + strandat 3323.436 kb on + strandat 3323.437 kb on - strandat 3323.437 kb on - strandat 3323.500 kb on - strandat 3323.506 kb on + strandat 3323.507 kb on - strandat 3323.510 kb on + strandat 3323.514 kb on + strandat 3323.515 kb on - strandat 3323.573 kb on + strandat 3323.574 kb on - strandat 3323.595 kb on - strandat 3323.609 kb on - strandat 3323.614 kb on + strandat 3323.923 kb on - strand, within OLJFJH_15765at 3324.012 kb on - strand, within OLJFJH_15765at 3324.093 kb on - strand, within OLJFJH_15765at 3324.102 kb on - strand, within OLJFJH_15765at 3324.102 kb on - strand, within OLJFJH_15765at 3324.102 kb on - strand, within OLJFJH_15765at 3324.149 kb on - strand, within OLJFJH_15765at 3324.306 kb on - strand, within OLJFJH_15765at 3324.398 kb on + strand, within OLJFJH_15765at 3324.484 kb on + strandat 3324.485 kb on - strandat 3324.486 kb on + strandat 3324.486 kb on + strandat 3324.514 kb on - strandat 3324.542 kb on - strandat 3324.564 kb on - strandat 3324.585 kb on + strandat 3324.585 kb on + strandat 3324.756 kb on + strandat 3324.757 kb on - strandat 3324.757 kb on - strandat 3324.790 kb on - strandat 3325.225 kb on - strandat 3325.365 kb on - strandat 3325.467 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
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3,322,633 + OLJFJH_15755 0.80 +0.5
3,322,633 + OLJFJH_15755 0.80 -0.3
3,322,634 - OLJFJH_15755 0.80 +0.4
3,322,634 - OLJFJH_15755 0.80 +0.5
3,322,673 - OLJFJH_15755 0.82 -0.3
3,322,726 + OLJFJH_15755 0.85 -0.3
3,322,726 + OLJFJH_15755 0.85 +1.8
3,322,726 + OLJFJH_15755 0.85 +1.2
3,322,726 + OLJFJH_15755 0.85 -2.3
3,322,726 + OLJFJH_15755 0.85 -1.2
3,322,726 + OLJFJH_15755 0.85 +0.2
3,322,726 + OLJFJH_15755 0.85 -0.6
3,322,726 + OLJFJH_15755 0.85 -1.4
3,322,726 + OLJFJH_15755 0.85 -0.1
3,322,726 + OLJFJH_15755 0.85 +0.1
3,322,727 - OLJFJH_15755 0.86 +0.1
3,322,727 - OLJFJH_15755 0.86 +1.6
3,322,727 - OLJFJH_15755 0.86 +0.5
3,322,727 - OLJFJH_15755 0.86 -0.4
3,322,727 - OLJFJH_15755 0.86 -1.9
3,322,727 - OLJFJH_15755 0.86 -0.1
3,322,729 - OLJFJH_15755 0.86 -0.7
3,322,759 + OLJFJH_15755 0.87 +0.2
3,322,945 + -0.9
3,323,204 - OLJFJH_15760 0.54 -1.3
3,323,304 + OLJFJH_15760 0.77 +0.3
3,323,307 + OLJFJH_15760 0.78 +1.5
3,323,335 + OLJFJH_15760 0.84 -0.7
3,323,406 + -1.1
3,323,407 - +0.3
3,323,422 - -1.0
3,323,422 - +1.6
3,323,424 + +0.3
3,323,424 + +2.8
3,323,433 - +0.4
3,323,436 + +0.5
3,323,436 + -0.5
3,323,437 - -0.2
3,323,437 - +0.5
3,323,500 - +0.3
3,323,506 + -0.9
3,323,507 - +0.4
3,323,510 + -0.0
3,323,514 + +1.9
3,323,515 - +1.5
3,323,573 + +0.4
3,323,574 - -0.1
3,323,595 - -0.4
3,323,609 - +3.2
3,323,614 + -0.2
3,323,923 - OLJFJH_15765 0.34 +1.7
3,324,012 - OLJFJH_15765 0.44 +1.1
3,324,093 - OLJFJH_15765 0.53 -1.0
3,324,102 - OLJFJH_15765 0.54 -0.1
3,324,102 - OLJFJH_15765 0.54 +0.2
3,324,102 - OLJFJH_15765 0.54 +0.9
3,324,149 - OLJFJH_15765 0.59 +0.1
3,324,306 - OLJFJH_15765 0.76 +3.6
3,324,398 + OLJFJH_15765 0.86 -2.1
3,324,484 + +0.5
3,324,485 - -0.8
3,324,486 + +1.1
3,324,486 + +0.9
3,324,514 - -0.8
3,324,542 - +2.0
3,324,564 - -0.5
3,324,585 + -0.7
3,324,585 + +0.3
3,324,756 + -0.5
3,324,757 - -1.4
3,324,757 - +0.1
3,324,790 - +0.6
3,325,225 - +1.0
3,325,365 - -1.1
3,325,467 + -0.1

Or see this region's nucleotide sequence