Strain Fitness in Erwinia amylovora T8 around OLJFJH_15600

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_15590 and OLJFJH_15595 are separated by 9 nucleotidesOLJFJH_15595 and OLJFJH_15600 are separated by 89 nucleotidesOLJFJH_15600 and OLJFJH_15605 are separated by 15 nucleotidesOLJFJH_15605 and OLJFJH_15610 are separated by 21 nucleotides OLJFJH_15590: OLJFJH_15590 - flagellar biosynthesis protein FlgA, at 3,289,511 to 3,290,617 _15590 OLJFJH_15595: OLJFJH_15595 - flagellar basal body L-ring protein FlgH, at 3,290,627 to 3,291,328 _15595 OLJFJH_15600: OLJFJH_15600 - flagellar basal-body rod protein FlgG, at 3,291,418 to 3,292,200 _15600 OLJFJH_15605: OLJFJH_15605 - flagellar biosynthesis protein FlgF, at 3,292,216 to 3,292,971 _15605 OLJFJH_15610: OLJFJH_15610 - flagellar hook protein FlgE, at 3,292,993 to 3,294,201 _15610 Position (kb) 3291 3292 3293Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8at 3290.516 kb on + strandat 3290.517 kb on - strandat 3290.546 kb on - strandat 3290.607 kb on - strandat 3290.607 kb on - strandat 3290.611 kb on + strandat 3290.628 kb on + strandat 3290.629 kb on - strandat 3290.629 kb on - strandat 3290.629 kb on - strandat 3290.639 kb on + strandat 3290.640 kb on - strandat 3290.640 kb on - strandat 3290.707 kb on - strand, within OLJFJH_15595at 3290.813 kb on - strand, within OLJFJH_15595at 3290.900 kb on - strand, within OLJFJH_15595at 3290.900 kb on - strand, within OLJFJH_15595at 3291.001 kb on + strand, within OLJFJH_15595at 3291.044 kb on - strand, within OLJFJH_15595at 3291.106 kb on + strand, within OLJFJH_15595at 3291.147 kb on + strand, within OLJFJH_15595at 3291.147 kb on + strand, within OLJFJH_15595at 3291.147 kb on + strand, within OLJFJH_15595at 3291.148 kb on - strand, within OLJFJH_15595at 3291.335 kb on - strandat 3291.346 kb on + strandat 3291.346 kb on + strandat 3291.347 kb on - strandat 3291.350 kb on + strandat 3291.351 kb on - strandat 3291.351 kb on - strandat 3291.354 kb on + strandat 3291.354 kb on + strandat 3291.354 kb on + strandat 3291.354 kb on + strandat 3291.354 kb on + strandat 3291.354 kb on + strandat 3291.354 kb on + strandat 3291.354 kb on + strandat 3291.354 kb on + strandat 3291.354 kb on + strandat 3291.355 kb on - strandat 3291.355 kb on - strandat 3291.355 kb on - strandat 3291.355 kb on - strandat 3291.355 kb on - strandat 3291.355 kb on - strandat 3291.355 kb on - strandat 3291.355 kb on - strandat 3291.355 kb on - strandat 3291.355 kb on - strandat 3291.355 kb on - strandat 3291.456 kb on + strandat 3291.456 kb on + strandat 3291.457 kb on - strandat 3291.468 kb on + strandat 3291.469 kb on - strandat 3291.474 kb on + strandat 3291.475 kb on - strandat 3291.482 kb on + strandat 3291.523 kb on + strand, within OLJFJH_15600at 3291.548 kb on + strand, within OLJFJH_15600at 3291.557 kb on + strand, within OLJFJH_15600at 3291.558 kb on - strand, within OLJFJH_15600at 3291.725 kb on - strand, within OLJFJH_15600at 3291.860 kb on + strand, within OLJFJH_15600at 3292.065 kb on - strand, within OLJFJH_15600at 3292.146 kb on + strandat 3292.146 kb on + strandat 3292.146 kb on + strandat 3292.146 kb on + strandat 3292.206 kb on - strandat 3292.206 kb on - strandat 3292.315 kb on - strand, within OLJFJH_15605at 3292.441 kb on - strand, within OLJFJH_15605at 3292.441 kb on - strand, within OLJFJH_15605at 3292.535 kb on - strand, within OLJFJH_15605at 3292.587 kb on + strand, within OLJFJH_15605at 3292.588 kb on - strand, within OLJFJH_15605at 3292.627 kb on + strand, within OLJFJH_15605at 3292.632 kb on + strand, within OLJFJH_15605at 3292.857 kb on + strand, within OLJFJH_15605at 3292.955 kb on + strandat 3292.955 kb on + strandat 3292.955 kb on + strandat 3292.955 kb on + strandat 3292.955 kb on + strandat 3292.955 kb on + strandat 3292.956 kb on - strandat 3292.956 kb on - strandat 3292.956 kb on - strandat 3292.956 kb on - strandat 3292.956 kb on - strandat 3292.958 kb on - strandat 3292.972 kb on - strandat 3293.061 kb on - strandat 3293.061 kb on - strandat 3293.061 kb on - strandat 3293.082 kb on + strandat 3293.083 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
remove
3,290,516 + -0.1
3,290,517 - -0.2
3,290,546 - -0.4
3,290,607 - -1.5
3,290,607 - -0.1
3,290,611 + +1.5
3,290,628 + -0.4
3,290,629 - +0.0
3,290,629 - -0.0
3,290,629 - +0.9
3,290,639 + +0.1
3,290,640 - +0.9
3,290,640 - +1.6
3,290,707 - OLJFJH_15595 0.11 -1.0
3,290,813 - OLJFJH_15595 0.26 +0.2
3,290,900 - OLJFJH_15595 0.39 -0.9
3,290,900 - OLJFJH_15595 0.39 -0.2
3,291,001 + OLJFJH_15595 0.53 -0.3
3,291,044 - OLJFJH_15595 0.59 +0.1
3,291,106 + OLJFJH_15595 0.68 -0.2
3,291,147 + OLJFJH_15595 0.74 +0.8
3,291,147 + OLJFJH_15595 0.74 -0.8
3,291,147 + OLJFJH_15595 0.74 +0.8
3,291,148 - OLJFJH_15595 0.74 -0.9
3,291,335 - +0.4
3,291,346 + -1.0
3,291,346 + +0.8
3,291,347 - +8.7
3,291,350 + +0.1
3,291,351 - +0.3
3,291,351 - -0.1
3,291,354 + -0.2
3,291,354 + -0.1
3,291,354 + -0.8
3,291,354 + +0.9
3,291,354 + -0.4
3,291,354 + +0.0
3,291,354 + -0.4
3,291,354 + -0.5
3,291,354 + +4.0
3,291,354 + +0.4
3,291,355 - -0.5
3,291,355 - +0.7
3,291,355 - -0.1
3,291,355 - -0.3
3,291,355 - +0.3
3,291,355 - +1.6
3,291,355 - +0.5
3,291,355 - -0.4
3,291,355 - +0.5
3,291,355 - +0.9
3,291,355 - +0.6
3,291,456 + +0.8
3,291,456 + +0.2
3,291,457 - -0.4
3,291,468 + +0.6
3,291,469 - -0.7
3,291,474 + +0.2
3,291,475 - -0.8
3,291,482 + -0.0
3,291,523 + OLJFJH_15600 0.13 +2.4
3,291,548 + OLJFJH_15600 0.17 +0.3
3,291,557 + OLJFJH_15600 0.18 -0.2
3,291,558 - OLJFJH_15600 0.18 -0.1
3,291,725 - OLJFJH_15600 0.39 +0.3
3,291,860 + OLJFJH_15600 0.56 +1.1
3,292,065 - OLJFJH_15600 0.83 +0.8
3,292,146 + -0.0
3,292,146 + -0.9
3,292,146 + +0.1
3,292,146 + -0.4
3,292,206 - -0.8
3,292,206 - -1.0
3,292,315 - OLJFJH_15605 0.13 +2.1
3,292,441 - OLJFJH_15605 0.30 +2.0
3,292,441 - OLJFJH_15605 0.30 +1.0
3,292,535 - OLJFJH_15605 0.42 -0.3
3,292,587 + OLJFJH_15605 0.49 -0.4
3,292,588 - OLJFJH_15605 0.49 +0.1
3,292,627 + OLJFJH_15605 0.54 -0.0
3,292,632 + OLJFJH_15605 0.55 +0.5
3,292,857 + OLJFJH_15605 0.85 -0.2
3,292,955 + +0.3
3,292,955 + -0.2
3,292,955 + -0.4
3,292,955 + +0.2
3,292,955 + -1.7
3,292,955 + -1.8
3,292,956 - -0.0
3,292,956 - +0.7
3,292,956 - +0.7
3,292,956 - +0.2
3,292,956 - +0.4
3,292,958 - +0.1
3,292,972 - +0.1
3,293,061 - +0.4
3,293,061 - -0.7
3,293,061 - +1.6
3,293,082 + +0.3
3,293,083 - -0.4

Or see this region's nucleotide sequence