Strain Fitness in Erwinia amylovora T8 around OLJFJH_15465

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_15460 and OLJFJH_15465 are separated by 402 nucleotidesOLJFJH_15465 and OLJFJH_15470 are separated by 22 nucleotidesOLJFJH_15470 and OLJFJH_15475 overlap by 17 nucleotides OLJFJH_15460: OLJFJH_15460 - PrpF protein, at 3,262,307 to 3,263,395 _15460 OLJFJH_15465: OLJFJH_15465 - beta-N-acetylhexosaminidase, at 3,263,798 to 3,264,817 _15465 OLJFJH_15470: OLJFJH_15470 - thiamine kinase, at 3,264,840 to 3,265,682 _15470 OLJFJH_15475: OLJFJH_15475 - penicillin-binding protein activator LpoB, at 3,265,666 to 3,266,262 _15475 Position (kb) 3263 3264 3265Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3262.804 kb on + strand, within OLJFJH_15460at 3262.805 kb on - strand, within OLJFJH_15460at 3262.826 kb on + strand, within OLJFJH_15460at 3262.827 kb on - strand, within OLJFJH_15460at 3262.827 kb on - strand, within OLJFJH_15460at 3263.095 kb on + strand, within OLJFJH_15460at 3263.364 kb on + strandat 3263.607 kb on + strandat 3263.799 kb on + strandat 3263.799 kb on + strandat 3263.799 kb on + strandat 3263.800 kb on - strandat 3263.972 kb on + strand, within OLJFJH_15465at 3264.182 kb on - strand, within OLJFJH_15465at 3264.182 kb on - strand, within OLJFJH_15465at 3264.183 kb on + strand, within OLJFJH_15465at 3264.184 kb on - strand, within OLJFJH_15465at 3264.184 kb on - strand, within OLJFJH_15465at 3264.184 kb on - strand, within OLJFJH_15465at 3264.184 kb on - strand, within OLJFJH_15465at 3264.202 kb on + strand, within OLJFJH_15465at 3264.203 kb on - strand, within OLJFJH_15465at 3265.010 kb on - strand, within OLJFJH_15470at 3265.222 kb on - strand, within OLJFJH_15470at 3265.274 kb on - strand, within OLJFJH_15470at 3265.279 kb on - strand, within OLJFJH_15470at 3265.438 kb on + strand, within OLJFJH_15470at 3265.566 kb on + strand, within OLJFJH_15470at 3265.566 kb on + strand, within OLJFJH_15470at 3265.567 kb on - strand, within OLJFJH_15470at 3265.567 kb on - strand, within OLJFJH_15470at 3265.749 kb on + strand, within OLJFJH_15475at 3265.749 kb on + strand, within OLJFJH_15475at 3265.749 kb on + strand, within OLJFJH_15475at 3265.750 kb on - strand, within OLJFJH_15475at 3265.750 kb on - strand, within OLJFJH_15475at 3265.750 kb on - strand, within OLJFJH_15475at 3265.750 kb on - strand, within OLJFJH_15475at 3265.750 kb on - strand, within OLJFJH_15475at 3265.753 kb on - strand, within OLJFJH_15475at 3265.772 kb on + strand, within OLJFJH_15475at 3265.772 kb on + strand, within OLJFJH_15475at 3265.781 kb on + strand, within OLJFJH_15475at 3265.781 kb on + strand, within OLJFJH_15475at 3265.781 kb on + strand, within OLJFJH_15475at 3265.782 kb on - strand, within OLJFJH_15475at 3265.782 kb on - strand, within OLJFJH_15475at 3265.796 kb on + strand, within OLJFJH_15475

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
remove
3,262,804 + OLJFJH_15460 0.46 +1.2
3,262,805 - OLJFJH_15460 0.46 -0.7
3,262,826 + OLJFJH_15460 0.48 -0.7
3,262,827 - OLJFJH_15460 0.48 -0.3
3,262,827 - OLJFJH_15460 0.48 +0.0
3,263,095 + OLJFJH_15460 0.72 -0.1
3,263,364 + -0.5
3,263,607 + +4.0
3,263,799 + +0.5
3,263,799 + +0.6
3,263,799 + -1.2
3,263,800 - +0.2
3,263,972 + OLJFJH_15465 0.17 +2.8
3,264,182 - OLJFJH_15465 0.38 +4.4
3,264,182 - OLJFJH_15465 0.38 +0.3
3,264,183 + OLJFJH_15465 0.38 +1.2
3,264,184 - OLJFJH_15465 0.38 -0.5
3,264,184 - OLJFJH_15465 0.38 -0.4
3,264,184 - OLJFJH_15465 0.38 -0.4
3,264,184 - OLJFJH_15465 0.38 +1.8
3,264,202 + OLJFJH_15465 0.40 -1.3
3,264,203 - OLJFJH_15465 0.40 +0.3
3,265,010 - OLJFJH_15470 0.20 -0.6
3,265,222 - OLJFJH_15470 0.45 -1.1
3,265,274 - OLJFJH_15470 0.51 +0.4
3,265,279 - OLJFJH_15470 0.52 +0.4
3,265,438 + OLJFJH_15470 0.71 -0.5
3,265,566 + OLJFJH_15470 0.86 -0.5
3,265,566 + OLJFJH_15470 0.86 +1.6
3,265,567 - OLJFJH_15470 0.86 -0.3
3,265,567 - OLJFJH_15470 0.86 +0.2
3,265,749 + OLJFJH_15475 0.14 -1.6
3,265,749 + OLJFJH_15475 0.14 -1.0
3,265,749 + OLJFJH_15475 0.14 -2.9
3,265,750 - OLJFJH_15475 0.14 -1.1
3,265,750 - OLJFJH_15475 0.14 -1.4
3,265,750 - OLJFJH_15475 0.14 -1.0
3,265,750 - OLJFJH_15475 0.14 -2.7
3,265,750 - OLJFJH_15475 0.14 -0.9
3,265,753 - OLJFJH_15475 0.15 -3.5
3,265,772 + OLJFJH_15475 0.18 -2.3
3,265,772 + OLJFJH_15475 0.18 -0.3
3,265,781 + OLJFJH_15475 0.19 -2.0
3,265,781 + OLJFJH_15475 0.19 -0.3
3,265,781 + OLJFJH_15475 0.19 +4.5
3,265,782 - OLJFJH_15475 0.19 -1.2
3,265,782 - OLJFJH_15475 0.19 -0.3
3,265,796 + OLJFJH_15475 0.22 -1.0

Or see this region's nucleotide sequence