Strain Fitness in Erwinia amylovora T8 around OLJFJH_15365

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_15355 and OLJFJH_15360 overlap by 4 nucleotidesOLJFJH_15360 and OLJFJH_15365 overlap by 8 nucleotidesOLJFJH_15365 and OLJFJH_15370 overlap by 1 nucleotides OLJFJH_15355: OLJFJH_15355 - flagellar M-ring protein FliF, at 3,240,209 to 3,241,930 _15355 OLJFJH_15360: OLJFJH_15360 - flagellar motor switch protein FliG, at 3,241,927 to 3,242,919 _15360 OLJFJH_15365: OLJFJH_15365 - flagellar assembly protein FliH, at 3,242,912 to 3,243,601 _15365 OLJFJH_15370: OLJFJH_15370 - flagellum-specific ATP synthase FliI, at 3,243,601 to 3,244,962 _15370 Position (kb) 3242 3243 3244Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 3241.926 kb on + strandat 3241.926 kb on + strandat 3241.926 kb on + strandat 3241.927 kb on - strandat 3241.927 kb on - strandat 3242.001 kb on + strandat 3242.002 kb on - strandat 3242.211 kb on + strand, within OLJFJH_15360at 3242.754 kb on + strand, within OLJFJH_15360at 3242.754 kb on + strand, within OLJFJH_15360at 3242.754 kb on + strand, within OLJFJH_15360at 3242.755 kb on - strand, within OLJFJH_15360at 3242.911 kb on + strandat 3242.911 kb on + strandat 3243.206 kb on - strand, within OLJFJH_15365at 3243.345 kb on + strand, within OLJFJH_15365at 3243.345 kb on + strand, within OLJFJH_15365at 3243.424 kb on - strand, within OLJFJH_15365at 3243.600 kb on - strandat 3243.600 kb on - strandat 3243.600 kb on - strandat 3243.655 kb on - strandat 3243.714 kb on - strandat 3244.039 kb on - strand, within OLJFJH_15370at 3244.154 kb on + strand, within OLJFJH_15370at 3244.158 kb on + strand, within OLJFJH_15370at 3244.189 kb on + strand, within OLJFJH_15370at 3244.189 kb on + strand, within OLJFJH_15370at 3244.335 kb on + strand, within OLJFJH_15370at 3244.336 kb on - strand, within OLJFJH_15370at 3244.499 kb on + strand, within OLJFJH_15370at 3244.574 kb on - strand, within OLJFJH_15370

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
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3,241,926 + -1.0
3,241,926 + +0.3
3,241,926 + +0.5
3,241,927 - -0.6
3,241,927 - -1.4
3,242,001 + -0.1
3,242,002 - -0.1
3,242,211 + OLJFJH_15360 0.29 +0.5
3,242,754 + OLJFJH_15360 0.83 +2.6
3,242,754 + OLJFJH_15360 0.83 +2.7
3,242,754 + OLJFJH_15360 0.83 +0.5
3,242,755 - OLJFJH_15360 0.83 -0.3
3,242,911 + -0.8
3,242,911 + -0.8
3,243,206 - OLJFJH_15365 0.43 +1.3
3,243,345 + OLJFJH_15365 0.63 -1.2
3,243,345 + OLJFJH_15365 0.63 +3.2
3,243,424 - OLJFJH_15365 0.74 +1.1
3,243,600 - -0.6
3,243,600 - -0.3
3,243,600 - -0.3
3,243,655 - -0.4
3,243,714 - +2.2
3,244,039 - OLJFJH_15370 0.32 +6.8
3,244,154 + OLJFJH_15370 0.41 +0.2
3,244,158 + OLJFJH_15370 0.41 -2.5
3,244,189 + OLJFJH_15370 0.43 +0.4
3,244,189 + OLJFJH_15370 0.43 -0.3
3,244,335 + OLJFJH_15370 0.54 -0.5
3,244,336 - OLJFJH_15370 0.54 -0.2
3,244,499 + OLJFJH_15370 0.66 +0.3
3,244,574 - OLJFJH_15370 0.71 -0.5

Or see this region's nucleotide sequence