Strain Fitness in Erwinia amylovora T8 around OLJFJH_15330

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_15325 and OLJFJH_15330 are separated by 291 nucleotidesOLJFJH_15330 and OLJFJH_15335 overlap by 16 nucleotides OLJFJH_15325: OLJFJH_15325 - amylovoran biosynthesis protein AmsF, at 3,233,474 to 3,235,222 _15325 OLJFJH_15330: OLJFJH_15330 - hypothetical protein, at 3,235,514 to 3,235,696 _15330 OLJFJH_15335: OLJFJH_15335 - antitermination protein, at 3,235,681 to 3,236,049 _15335 Position (kb) 3235 3236Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3234.536 kb on + strand, within OLJFJH_15325at 3234.703 kb on + strand, within OLJFJH_15325at 3234.703 kb on + strand, within OLJFJH_15325at 3234.769 kb on + strand, within OLJFJH_15325at 3234.802 kb on + strand, within OLJFJH_15325at 3234.802 kb on + strand, within OLJFJH_15325at 3234.802 kb on + strand, within OLJFJH_15325at 3234.814 kb on - strand, within OLJFJH_15325at 3234.819 kb on + strand, within OLJFJH_15325at 3234.819 kb on + strand, within OLJFJH_15325at 3234.863 kb on + strand, within OLJFJH_15325at 3235.154 kb on + strandat 3235.194 kb on - strandat 3235.299 kb on + strandat 3235.351 kb on + strandat 3235.351 kb on + strandat 3235.351 kb on + strandat 3235.351 kb on + strandat 3235.355 kb on + strandat 3235.355 kb on + strandat 3235.417 kb on + strandat 3235.421 kb on + strandat 3235.549 kb on + strand, within OLJFJH_15330at 3235.590 kb on - strand, within OLJFJH_15330at 3235.820 kb on + strand, within OLJFJH_15335at 3235.879 kb on - strand, within OLJFJH_15335at 3235.919 kb on - strand, within OLJFJH_15335at 3235.980 kb on - strand, within OLJFJH_15335at 3236.001 kb on - strand, within OLJFJH_15335at 3236.040 kb on + strandat 3236.041 kb on - strandat 3236.108 kb on - strandat 3236.109 kb on + strandat 3236.109 kb on + strandat 3236.110 kb on - strandat 3236.165 kb on + strandat 3236.165 kb on + strandat 3236.166 kb on - strandat 3236.282 kb on - strandat 3236.413 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
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3,234,536 + OLJFJH_15325 0.61 -0.5
3,234,703 + OLJFJH_15325 0.70 -0.5
3,234,703 + OLJFJH_15325 0.70 -0.2
3,234,769 + OLJFJH_15325 0.74 +0.3
3,234,802 + OLJFJH_15325 0.76 -1.1
3,234,802 + OLJFJH_15325 0.76 +0.1
3,234,802 + OLJFJH_15325 0.76 -1.7
3,234,814 - OLJFJH_15325 0.77 +3.1
3,234,819 + OLJFJH_15325 0.77 +0.2
3,234,819 + OLJFJH_15325 0.77 -0.2
3,234,863 + OLJFJH_15325 0.79 -0.1
3,235,154 + -1.2
3,235,194 - +1.2
3,235,299 + -1.7
3,235,351 + +0.4
3,235,351 + -0.1
3,235,351 + -1.4
3,235,351 + +1.6
3,235,355 + -0.5
3,235,355 + +0.5
3,235,417 + -0.5
3,235,421 + -2.3
3,235,549 + OLJFJH_15330 0.19 -0.7
3,235,590 - OLJFJH_15330 0.42 -1.7
3,235,820 + OLJFJH_15335 0.38 +0.0
3,235,879 - OLJFJH_15335 0.54 -1.2
3,235,919 - OLJFJH_15335 0.64 -1.9
3,235,980 - OLJFJH_15335 0.81 +1.8
3,236,001 - OLJFJH_15335 0.87 +0.8
3,236,040 + +0.5
3,236,041 - +0.2
3,236,108 - +0.2
3,236,109 + -0.5
3,236,109 + -0.3
3,236,110 - -0.5
3,236,165 + +0.3
3,236,165 + +0.5
3,236,166 - -1.4
3,236,282 - +1.7
3,236,413 + +0.9

Or see this region's nucleotide sequence