Strain Fitness in Erwinia amylovora T8 around OLJFJH_15015

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_15000 and OLJFJH_15005 are separated by 12 nucleotidesOLJFJH_15005 and OLJFJH_15010 overlap by 4 nucleotidesOLJFJH_15010 and OLJFJH_15015 overlap by 8 nucleotidesOLJFJH_15015 and OLJFJH_15020 overlap by 4 nucleotidesOLJFJH_15020 and OLJFJH_15025 are separated by 434 nucleotidesOLJFJH_15025 and OLJFJH_15030 overlap by 20 nucleotides OLJFJH_15000: OLJFJH_15000 - type III secretion system export apparatus subunit SctT, at 3,170,774 to 3,171,544 _15000 OLJFJH_15005: OLJFJH_15005 - type III secretion system export apparatus subunit SctS, at 3,171,557 to 3,171,811 _15005 OLJFJH_15010: OLJFJH_15010 - EscR/YscR/HrcR family type III secretion system export apparatus protein, at 3,171,808 to 3,172,479 _15010 OLJFJH_15015: OLJFJH_15015 - Type III flagellar switch regulator (C-ring) FliN C-term, at 3,172,472 to 3,173,395 _15015 OLJFJH_15020: OLJFJH_15020 - hypothetical protein, at 3,173,392 to 3,173,682 _15020 OLJFJH_15025: OLJFJH_15025 - hypothetical protein, at 3,174,117 to 3,174,254 _15025 OLJFJH_15030: OLJFJH_15030 - type III secretion system protein, at 3,174,235 to 3,174,696 _15030 Position (kb) 3172 3173 3174Strain fitness (log2 ratio) -1 0 1at 3171.484 kb on - strandat 3171.635 kb on - strand, within OLJFJH_15005at 3171.645 kb on - strand, within OLJFJH_15005at 3172.349 kb on - strand, within OLJFJH_15010at 3172.351 kb on - strand, within OLJFJH_15010at 3172.681 kb on + strand, within OLJFJH_15015at 3172.934 kb on + strand, within OLJFJH_15015at 3172.934 kb on + strand, within OLJFJH_15015at 3173.052 kb on - strand, within OLJFJH_15015at 3173.655 kb on + strandat 3173.728 kb on - strandat 3173.730 kb on + strandat 3173.731 kb on - strandat 3173.890 kb on - strandat 3174.054 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
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3,171,484 - -0.4
3,171,635 - OLJFJH_15005 0.31 -0.3
3,171,645 - OLJFJH_15005 0.35 +0.5
3,172,349 - OLJFJH_15010 0.81 +0.5
3,172,351 - OLJFJH_15010 0.81 +0.1
3,172,681 + OLJFJH_15015 0.23 -0.9
3,172,934 + OLJFJH_15015 0.50 -1.4
3,172,934 + OLJFJH_15015 0.50 -1.0
3,173,052 - OLJFJH_15015 0.63 -0.9
3,173,655 + -0.3
3,173,728 - +1.1
3,173,730 + -0.3
3,173,731 - +1.3
3,173,890 - +1.4
3,174,054 + -0.3

Or see this region's nucleotide sequence