Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_14375 and OLJFJH_14380 overlap by 1 nucleotides OLJFJH_14380 and OLJFJH_14385 overlap by 8 nucleotides OLJFJH_14385 and OLJFJH_14390 overlap by 4 nucleotides OLJFJH_14390 and OLJFJH_14395 are separated by 91 nucleotides
OLJFJH_14375: OLJFJH_14375 - electron transport complex subunit RsxD, at 3,038,542 to 3,039,603
_14375
OLJFJH_14380: OLJFJH_14380 - electron transport complex subunit RsxG, at 3,039,603 to 3,040,235
_14380
OLJFJH_14385: OLJFJH_14385 - electron transport complex subunit RsxE, at 3,040,228 to 3,040,929
_14385
OLJFJH_14390: OLJFJH_14390 - endonuclease III, at 3,040,926 to 3,041,561
_14390
OLJFJH_14395: OLJFJH_14395 - choline dehydrogenase, at 3,041,653 to 3,043,293
_14395
Position (kb)
3040
3041 Strain fitness (log2 ratio)
-1
0
1 at 3039.423 kb on + strand, within OLJFJH_14375 at 3039.559 kb on + strand at 3039.559 kb on + strand at 3039.559 kb on + strand at 3039.563 kb on - strand at 3039.916 kb on + strand, within OLJFJH_14380 at 3040.670 kb on + strand, within OLJFJH_14385 at 3040.838 kb on - strand, within OLJFJH_14385 at 3041.086 kb on + strand, within OLJFJH_14390 at 3041.148 kb on + strand, within OLJFJH_14390 at 3041.149 kb on - strand, within OLJFJH_14390 at 3041.149 kb on - strand, within OLJFJH_14390 at 3041.149 kb on - strand, within OLJFJH_14390 at 3041.178 kb on - strand, within OLJFJH_14390 at 3041.178 kb on - strand, within OLJFJH_14390 at 3041.178 kb on - strand, within OLJFJH_14390 at 3041.275 kb on + strand, within OLJFJH_14390 at 3041.282 kb on + strand, within OLJFJH_14390 at 3041.345 kb on + strand, within OLJFJH_14390 at 3041.346 kb on - strand, within OLJFJH_14390 at 3041.385 kb on - strand, within OLJFJH_14390 at 3041.393 kb on - strand, within OLJFJH_14390 at 3041.478 kb on + strand, within OLJFJH_14390 at 3041.666 kb on + strand at 3041.808 kb on + strand at 3041.809 kb on - strand at 3041.809 kb on - strand at 3041.816 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8 remove 3,039,423 + OLJFJH_14375 0.83 -0.3 3,039,559 + -0.0 3,039,559 + +0.8 3,039,559 + +0.5 3,039,563 - -0.4 3,039,916 + OLJFJH_14380 0.49 -0.3 3,040,670 + OLJFJH_14385 0.63 -0.3 3,040,838 - OLJFJH_14385 0.87 +1.2 3,041,086 + OLJFJH_14390 0.25 -0.7 3,041,148 + OLJFJH_14390 0.35 +0.4 3,041,149 - OLJFJH_14390 0.35 -0.0 3,041,149 - OLJFJH_14390 0.35 -0.7 3,041,149 - OLJFJH_14390 0.35 -0.9 3,041,178 - OLJFJH_14390 0.40 -0.7 3,041,178 - OLJFJH_14390 0.40 -0.2 3,041,178 - OLJFJH_14390 0.40 -0.1 3,041,275 + OLJFJH_14390 0.55 -0.3 3,041,282 + OLJFJH_14390 0.56 +0.3 3,041,345 + OLJFJH_14390 0.66 +0.8 3,041,346 - OLJFJH_14390 0.66 -0.4 3,041,385 - OLJFJH_14390 0.72 -1.2 3,041,393 - OLJFJH_14390 0.73 -1.6 3,041,478 + OLJFJH_14390 0.87 -0.7 3,041,666 + -1.5 3,041,808 + -0.2 3,041,809 - -0.7 3,041,809 - -0.5 3,041,816 - +1.7
Or see this region's nucleotide sequence