Strain Fitness in Erwinia amylovora T8 around OLJFJH_14315

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_14310 and OLJFJH_14315 are separated by 59 nucleotidesOLJFJH_14315 and OLJFJH_14320 are separated by 95 nucleotides OLJFJH_14310: OLJFJH_14310 - adenosine deaminase, at 3,023,845 to 3,024,840 _14310 OLJFJH_14315: OLJFJH_14315 - oxidoreductase, at 3,024,900 to 3,025,940 _14315 OLJFJH_14320: OLJFJH_14320 - arabinose operon transcriptional regulator AraC, at 3,026,036 to 3,026,932 _14320 Position (kb) 3024 3025 3026Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3023.984 kb on + strand, within OLJFJH_14310at 3023.984 kb on + strand, within OLJFJH_14310at 3023.985 kb on - strand, within OLJFJH_14310at 3023.985 kb on - strand, within OLJFJH_14310at 3024.151 kb on + strand, within OLJFJH_14310at 3024.153 kb on + strand, within OLJFJH_14310at 3024.153 kb on + strand, within OLJFJH_14310at 3024.154 kb on - strand, within OLJFJH_14310at 3024.237 kb on + strand, within OLJFJH_14310at 3024.237 kb on + strand, within OLJFJH_14310at 3024.261 kb on + strand, within OLJFJH_14310at 3024.262 kb on - strand, within OLJFJH_14310at 3024.462 kb on + strand, within OLJFJH_14310at 3024.463 kb on - strand, within OLJFJH_14310at 3024.591 kb on + strand, within OLJFJH_14310at 3024.666 kb on + strand, within OLJFJH_14310at 3024.667 kb on - strand, within OLJFJH_14310at 3024.667 kb on - strand, within OLJFJH_14310at 3024.667 kb on - strand, within OLJFJH_14310at 3024.672 kb on + strand, within OLJFJH_14310at 3024.705 kb on - strand, within OLJFJH_14310at 3024.715 kb on + strand, within OLJFJH_14310at 3024.715 kb on + strand, within OLJFJH_14310at 3024.715 kb on + strand, within OLJFJH_14310at 3024.716 kb on - strand, within OLJFJH_14310at 3024.716 kb on - strand, within OLJFJH_14310at 3024.862 kb on + strandat 3024.862 kb on + strandat 3024.863 kb on - strandat 3025.033 kb on + strand, within OLJFJH_14315at 3025.192 kb on + strand, within OLJFJH_14315at 3025.196 kb on + strand, within OLJFJH_14315at 3025.196 kb on + strand, within OLJFJH_14315at 3025.196 kb on + strand, within OLJFJH_14315at 3025.196 kb on + strand, within OLJFJH_14315at 3025.309 kb on + strand, within OLJFJH_14315at 3025.501 kb on + strand, within OLJFJH_14315at 3025.785 kb on + strand, within OLJFJH_14315at 3025.786 kb on - strand, within OLJFJH_14315at 3025.906 kb on + strandat 3026.129 kb on + strand, within OLJFJH_14320at 3026.142 kb on + strand, within OLJFJH_14320at 3026.204 kb on + strand, within OLJFJH_14320at 3026.205 kb on - strand, within OLJFJH_14320at 3026.435 kb on + strand, within OLJFJH_14320at 3026.435 kb on + strand, within OLJFJH_14320at 3026.494 kb on + strand, within OLJFJH_14320at 3026.495 kb on - strand, within OLJFJH_14320at 3026.628 kb on + strand, within OLJFJH_14320at 3026.629 kb on - strand, within OLJFJH_14320at 3026.673 kb on + strand, within OLJFJH_14320at 3026.676 kb on + strand, within OLJFJH_14320at 3026.677 kb on - strand, within OLJFJH_14320at 3026.677 kb on - strand, within OLJFJH_14320at 3026.776 kb on + strand, within OLJFJH_14320at 3026.777 kb on - strand, within OLJFJH_14320at 3026.782 kb on + strand, within OLJFJH_14320at 3026.814 kb on + strand, within OLJFJH_14320at 3026.932 kb on + strandat 3026.932 kb on + strandat 3026.932 kb on + strandat 3026.933 kb on - strandat 3026.933 kb on - strandat 3026.933 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
remove
3,023,984 + OLJFJH_14310 0.14 -2.5
3,023,984 + OLJFJH_14310 0.14 -0.8
3,023,985 - OLJFJH_14310 0.14 +0.3
3,023,985 - OLJFJH_14310 0.14 +0.5
3,024,151 + OLJFJH_14310 0.31 +0.3
3,024,153 + OLJFJH_14310 0.31 -0.2
3,024,153 + OLJFJH_14310 0.31 +0.3
3,024,154 - OLJFJH_14310 0.31 -0.4
3,024,237 + OLJFJH_14310 0.39 +0.4
3,024,237 + OLJFJH_14310 0.39 +5.1
3,024,261 + OLJFJH_14310 0.42 +0.3
3,024,262 - OLJFJH_14310 0.42 -1.6
3,024,462 + OLJFJH_14310 0.62 +2.0
3,024,463 - OLJFJH_14310 0.62 -0.3
3,024,591 + OLJFJH_14310 0.75 +0.3
3,024,666 + OLJFJH_14310 0.82 -0.4
3,024,667 - OLJFJH_14310 0.83 -0.3
3,024,667 - OLJFJH_14310 0.83 +0.2
3,024,667 - OLJFJH_14310 0.83 +1.0
3,024,672 + OLJFJH_14310 0.83 -0.0
3,024,705 - OLJFJH_14310 0.86 -0.2
3,024,715 + OLJFJH_14310 0.87 -1.0
3,024,715 + OLJFJH_14310 0.87 -0.2
3,024,715 + OLJFJH_14310 0.87 +0.7
3,024,716 - OLJFJH_14310 0.87 +0.2
3,024,716 - OLJFJH_14310 0.87 +0.1
3,024,862 + +0.3
3,024,862 + +0.3
3,024,863 - -0.7
3,025,033 + OLJFJH_14315 0.13 -0.1
3,025,192 + OLJFJH_14315 0.28 +5.4
3,025,196 + OLJFJH_14315 0.28 +1.0
3,025,196 + OLJFJH_14315 0.28 -0.9
3,025,196 + OLJFJH_14315 0.28 +0.6
3,025,196 + OLJFJH_14315 0.28 -0.4
3,025,309 + OLJFJH_14315 0.39 -0.3
3,025,501 + OLJFJH_14315 0.58 +1.7
3,025,785 + OLJFJH_14315 0.85 -0.1
3,025,786 - OLJFJH_14315 0.85 +0.6
3,025,906 + +0.5
3,026,129 + OLJFJH_14320 0.10 -1.7
3,026,142 + OLJFJH_14320 0.12 -0.5
3,026,204 + OLJFJH_14320 0.19 +1.0
3,026,205 - OLJFJH_14320 0.19 +0.2
3,026,435 + OLJFJH_14320 0.44 -1.2
3,026,435 + OLJFJH_14320 0.44 -0.6
3,026,494 + OLJFJH_14320 0.51 +1.2
3,026,495 - OLJFJH_14320 0.51 -0.6
3,026,628 + OLJFJH_14320 0.66 -0.1
3,026,629 - OLJFJH_14320 0.66 -1.6
3,026,673 + OLJFJH_14320 0.71 -1.0
3,026,676 + OLJFJH_14320 0.71 -0.0
3,026,677 - OLJFJH_14320 0.71 -0.8
3,026,677 - OLJFJH_14320 0.71 -0.8
3,026,776 + OLJFJH_14320 0.82 -1.2
3,026,777 - OLJFJH_14320 0.83 -0.5
3,026,782 + OLJFJH_14320 0.83 +1.5
3,026,814 + OLJFJH_14320 0.87 -0.6
3,026,932 + -0.0
3,026,932 + +1.2
3,026,932 + +0.1
3,026,933 - +0.4
3,026,933 - -0.8
3,026,933 - +0.5

Or see this region's nucleotide sequence